|
| Status |
Public on Oct 10, 2012 |
| Title |
Rat Liver sense 2 (exon) |
| Sample type |
RNA |
| |
|
| Source name |
Rat Liver sense 2 (exon)
|
| Organism |
Rattus norvegicus |
| Characteristics |
tissue: liver
transcript type: Sense transcript (exon)
ambion catalog number: AM7900
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Tissue total RNA purchased from Ambion
|
| Label |
biotin
|
| Label protocol |
Sense transcript detection labeled using standard Affymetrix labeling protocol. Antisense transcript detection labeled using ATE protocol (Ge et al., 2008; PMID 18211689)
|
| |
|
| Hybridization protocol |
Array hybridization was performed according to the manufacturer's instruction (Affymetrix) at the UCLA Microarray Core Facility.
|
| Scan protocol |
Array scanning was performed according to the manufacturer's instruction (Affymetrix) at the UCLA Microarray Core Facility.
|
| Description |
RMA expression value derived from Expression Console software; core-exon analysis
|
| Data processing |
probeset group file: RaEx-1_0-st-v1.r2.pgf
meta-probeset file: RaEx-1_0-st-v1.r2.dt1.rn4.core.mps
CEL files were processed using Affymetrix Expression Console
|
| |
|
| Submission date |
Oct 09, 2012 |
| Last update date |
Apr 16, 2013 |
| Contact name |
Maurice Ling |
| E-mail(s) |
maurice.ling@sdstate.edu
|
| Organization name |
South Dakota State University
|
| Department |
Mathematics and Statistics
|
| Street address |
Box 2220
|
| City |
Brookings |
| ZIP/Postal code |
57007 |
| Country |
USA |
| |
|
| Platform ID |
GPL6194 |
| Series (2) |
| GSE41409 |
Sense and antisense exon profiling across human, mouse, and rat |
| GSE41464 |
Sense exon profiling across human, mouse, and rat |
|
| Relations |
| Reanalyzed by |
GSM1017117 |
