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Sample GSM1038 Query DataSets for GSM1038
Status Public on Feb 12, 2002
Title DBYmsn2-4- 37degree heat - 20 min
Sample type RNA
 
Channel 1
Source name time = 0 min (at 30 degrees)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 20 min (at 37 degrees)
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12-85
 
Submission date Feb 08, 2002
Last update date May 27, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT
1 273 214 1075 955 780 193 175 236 1055 1291 .873 0 -.027 .708 86 82 1.378 1.019 .726 .981 .674 990 225 68 85 109 126
2 255 196 188 360 189 196 171 231 255 486 .897 0 .44 1.034 29 32 .995 .737 1.005 1.356 .921 731 225 68 85 126 143
3 210 145 61 193 52 167 141 191 70 261 .799 0 .199 .944 26 26 1.173 .871 .852 1.148 .806 720 225 68 85 144 161
4 145 115 86 185 69 133 116 157 93 250 .841 0 .113 .869 24 24 1.246 .925 .802 1.081 .691 720 225 68 85 161 178
5 160 105 1876 1815 1707 133 108 146 2307 2453 .89 0 .298 .902 78 75 1.099 .813 .91 1.23 .8 746 225 68 85 179 196
6 152 100 189 250 150 125 100 135 203 338 .863 0 .103 .88 31 29 1.26 .931 .794 1.074 .683 731 225 68 85 197 214
7 120 88 1 97 2 164 95 128 3 131 .004 0 1.585 1.592 11 17 .5 .333 2 3 .005 745 225 68 85 214 231
8 110 84 4 180 85 171 95 128 115 243 .116 0 4.845 1.59 15 14 .047 .035 21.25 28.75 2.682 781 225 68 85 232 249
9 116 81 7 94 4 304 90 122 5 127 .129 0 -.485 1.071 15 15 1.75 1.4 .571 .714 .123 756 225 68 85 250 267
10 129 83 82 348 91 123 111 -.046 0 1.242 8 11 -.054 756 225 68 85 267 284
11 128 83 94 2 340 92 124 3 127 .283 0 1.05 10 15 .319 781 225 68 85 285 302
12 104 86 85 104 92 124 115 .01 0 1.179 8 9 .01 756 225 68 85 303 320
13 108 86 21 102 10 105 92 124 14 138 .331 0 -.585 1.045 23 18 2.1 1.5 .476 .667 .244 756 225 68 85 320 337
14 98 82 4 95 3 100 92 124 4 128 .211 0 0 .952 14 15 1.333 1 .75 1 .289 746 225 69 86 338 355
15 82 78 15 109 20 94 89 120 27 147 .351 0 .848 1.4 17 28 .75 .556 1.333 1.8 .318 720 225 69 86 356 373
16 81 77 18 103 16 91 87 118 21 139 .329 0 .222 1.375 24 24 1.125 .857 .889 1.167 .388 720 225 69 86 373 390
17 80 75 10 98 13 90 85 115 17 132 .069 0 .766 1.37 19 22 .769 .588 1.3 1.7 .076 735 225 69 86 391 408
18 90 77 11 92 5 169 87 118 6 124 .193 0 -.874 .944 20 17 2.2 1.833 .455 .545 .219 731 225 69 86 409 426
19 94 80 75 474 383 169 91 123 518 641 .857 -100 2.788 2.939 30 26 .196 .145 5.107 6.907 4.233 756 225 69 86 426 443
20 91 85 127 37 112 90 122 50 172 .456 0 1.667 10 24 1.211 771 225 69 86 444 461

Total number of rows: 9216

Table truncated, full table size 1061 Kbytes.




Supplementary data files not provided
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