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Sample GSM1039 Query DataSets for GSM1039
Status Public on Feb 12, 2002
Title 1M sorbitol - 15 min
Sample type RNA
 
Channel 1
Source name time = 0 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
Channel 2
Source name time = 15 min
Organism Saccharomyces cerevisiae
Extracted molecule total RNA
 
 
Description ScanAlyze version 2.33 scanning software was used.
Keywords = starvation
Keywords = YPD-stationary-phase
Lot batch = y12-3
 
Submission date Feb 08, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL52
Series (1)
GSE18 Yeast Stress Response

Data table header descriptions
ID_REF reference identifier
CH1B_MEAN mean of channel 1 background pixels
CH1B_MEDIAN median of channel 1 background pixels
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean of channel 2 signal pixels
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background pixels
CH2B_MEDIAN median of channel 2 background pixels
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN arithmetic mean of ratios of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN arithmetic mean of ratios of CH2DN_MEAN to CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 106 102 925 995 882 116 113 116 910 1026 .83 0 -.024 .935 86 87 1.049 1.016 .954 .984 .752 1119 177 122 137 90 105 -.024
2 115 102 119 240 131 115 109 112 135 247 .752 0 .182 1.387 25 31 .908 .881 1.101 1.134 .706 928 177 121 136 107 122 .182
3 111 97 2352 2632 2524 115 108 111 2602 2713 .839 0 .146 1.139 88 92 .932 .904 1.073 1.106 .84 950 177 121 136 125 140 .146
4 99 96 187 308 199 111 109 112 206 318 .803 0 .14 1.29 28 31 .94 .908 1.064 1.102 .714 918 177 121 136 143 158 .14
5 99 96 1484 1598 1486 114 112 115 1532 1647 .874 0 .046 1.097 82 85 .999 .969 1.001 1.032 .863 906 177 121 136 160 175 .046
6 105 101 220 459 343 120 116 120 353 473 .922 0 .682 1.425 32 33 .641 .623 1.559 1.605 1.6 919 177 121 136 178 193 .682
7 107 102 10 120 3 123 117 121 3 124 .362 0 -1.737 .706 11 6 3.333 3.333 .3 .3 .39 937 177 120 135 196 211 -1.737
8 104 99 103 117 111 114 106 .027 0 1.44 3 3 .032 928 177 120 135 213 228
9 100 97 98 105 102 105 101 -.064 0 .75 5 3 -.066 897 177 120 135 231 246
10 110 103 112 1 116 111 114 1 115 -.042 0 1.051 1 6 -.052 897 177 120 135 247 262
11 115 102 9 120 5 120 115 119 5 124 .294 0 -.848 1.32 11 10 1.8 1.8 .556 .556 .317 915 177 120 135 265 280 -.848
12 107 99 2 110 6 110 104 107 6 113 -.007 0 1.585 1.273 8 10 .333 .333 3 3 -.009 896 177 120 135 282 297 1.585
13 105 101 2 113 3 113 110 113 3 116 -.02 0 .585 .746 7 6 .667 .667 1.5 1.5 -.022 909 177 120 135 300 315 .585
14 114 108 7 131 12 126 119 123 12 135 .009 0 .778 1.154 7 10 .583 .583 1.714 1.714 .01 937 177 119 134 318 333 .778
15 118 112 119 130 123 127 123 .058 0 1.813 3 3 .059 928 177 119 134 335 350
16 112 107 120 127 121 125 124 .107 0 .737 5 5 .123 932 177 119 134 353 368
17 108 105 117 123 119 123 121 -.028 0 1.087 3 2 -.034 928 177 119 134 371 386
18 111 108 17 134 14 125 120 124 14 138 .228 0 -.28 .963 18 12 1.214 1.214 .824 .824 .218 896 177 119 134 389 404 -.28
19 111 108 6 124 4 125 120 124 4 128 0 0 -.585 1 6 8 1.5 1.5 .667 .667 0 896 177 119 134 406 421 -.585
20 113 105 4 132 18 121 114 118 18 136 .336 0 2.17 1.579 8 12 .222 .222 4.5 4.5 .736 950 177 118 133 424 439 2.17

Total number of rows: 9216

Table truncated, full table size 1095 Kbytes.




Supplementary data files not provided
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