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Sample GSM104084 Query DataSets for GSM104084
Status Public on Apr 11, 2006
Title Treatment: 018; time: 24 hrs; repeat: 3; chip B
Sample type RNA
 
Source name LNCaP cells; Human, prostate carcinoma, metastasized to lymph node; Maintained in DMEM/8% charcoal-stripped serum for 3 days before treatment.
Organism Homo sapiens
Characteristics In this experiment LNCaP cells
were treated with Vehicle (ethanol),
DHT (10 nM) or RTI-6413-018 (100 nM).
Treatment was done for 6 and 24 hrs.
The entire experiment was repeated 3 times.
Extracted molecule total RNA
Label Biotin
 
Description A study of the SARM-regulated gene expression in LNCaP prostate carcinoma cells
Data processing Standard Affymetrix scanning/normalization process
 
Submission date Apr 07, 2006
Last update date Apr 10, 2006
Contact name Dmitri A Kazmin
E-mail(s) dkazmin@stanford.edu
Organization name Stanford University
Department Institute for Immunity, Transplantation and Infection
Lab Bali Pulendran
Street address 240 Pasteur Dr
City Palo Alto
State/province CA
ZIP/Postal code 94304
Country USA
 
Platform ID GPL97
Series (1)
GSE4636 Differential redulation of gene expression by an RTI SARM and canonical agonist of androgen receptor

Data table header descriptions
ID_REF
0068_1718_H133B_1824.3_Stat Pairs Probe pairs available (PM/MM)
0068_1718_H133B_1824.3_Stat Pairs Used Probe pairs used (PM/MM)
VALUE Absolute measured signal
ABS_CALL Present/absent call
DETECTION P-VALUE P-value for the P/A call

Data table
ID_REF 0068_1718_H133B_1824.3_Stat Pairs 0068_1718_H133B_1824.3_Stat Pairs Used VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 20 20 688.7 P 0.003212
AFFX-BioB-M_at 20 20 1998.2 P 0.00039
AFFX-BioB-3_at 20 20 967.3 P 0.00039
AFFX-BioC-5_at 20 20 2034.2 P 0.000169
AFFX-BioC-3_at 20 20 1455.6 P 0.000225
AFFX-BioDn-5_at 20 20 2069.7 P 0.000147
AFFX-BioDn-3_at 20 20 13808.1 P 0.000147
AFFX-CreX-5_at 20 20 19709.9 P 0.000044
AFFX-CreX-3_at 20 20 30779 P 0.000044
AFFX-DapX-5_at 20 20 104.4 A 0.216524
AFFX-DapX-M_at 20 20 106.6 A 0.275146
AFFX-DapX-3_at 20 20 28.4 A 0.860518
AFFX-LysX-5_at 20 20 17 A 0.48511
AFFX-LysX-M_at 20 20 150.2 A 0.354453
AFFX-LysX-3_at 20 20 26.2 A 0.574038
AFFX-PheX-5_at 20 20 7.7 A 0.910522
AFFX-PheX-M_at 20 20 21.2 A 0.852061
AFFX-PheX-3_at 20 20 111.6 A 0.672921
AFFX-ThrX-5_at 20 20 20.5 A 0.876428
AFFX-ThrX-M_at 20 20 102 A 0.32708

Total number of rows: 22645

Table truncated, full table size 724 Kbytes.




Supplementary file Size Download File type/resource
GSM104084.CEL.gz 3.3 Mb (ftp)(http) CEL

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