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Sample GSM1056447 Query DataSets for GSM1056447
Status Public on Dec 18, 2013
Title CHC578T
Sample type genomic
 
Source name CHC578T
Organism Homo sapiens
Characteristics age: 34
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.0381 1 200 11394 0.014 1.541 1.554 0.994
rs1000002 -0.3161 1 312 5694 0.024 0.789 0.813 0.981
rs10000023 -0.2333 0.0014 19040 473 1.661 0.059 1.72 0.023
rs1000003 -0.3371 0.02 10666 617 0.956 0.079 1.034 0.052
rs10000030 0.1234 0.5461 1163 2023 0.111 0.296 0.407 0.771
rs10000037 -0.1024 0.4929 5626 3324 0.547 0.483 1.03 0.461
rs10000041 -0.2447 0 14379 397 1.403 0.049 1.452 0.022
rs10000042 -0.1007 1 372 5712 0.03 0.772 0.802 0.975
rs10000049 0.103 0 15869 336 1.233 0.033 1.266 0.017
rs1000007 -0.0425 0 12368 193 1.206 0.021 1.227 0.011
rs10000073 -0.3035 0 11473 132 0.891 0.01 0.901 0.007
rs10000081 -0.2345 0.0013 9184 355 0.8 0.045 0.846 0.036
rs10000092 -0.226 0.4696 4252 2549 0.369 0.343 0.712 0.476
rs10000105 0.0941 1 419 9306 0.028 1.149 1.176 0.985
rs10000119 0.0624 1 435 9327 0.035 1.261 1.296 0.982
rs10000124 -0.0798 1 331 9546 0.026 1.29 1.316 0.987
rs10000154 -0.1075 0 8376 141 0.73 0.016 0.746 0.014
rs1000016 -0.391 0.0038 5410 195 0.527 0.026 0.553 0.031
rs10000160 -0.1129 1 432 5165 0.035 0.698 0.733 0.968
rs10000169 0.1912 0.4822 8575 5880 0.746 0.793 1.539 0.519

Total number of rows: 730525

Table truncated, full table size 39293 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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