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Sample GSM1056465 Query DataSets for GSM1056465
Status Public on Dec 18, 2013
Title CHC1490T
Sample type genomic
 
Source name CHC1490T
Organism Homo sapiens
Characteristics age: 45
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.0982 0.9984 394 15382 0.028 1.599 1.627 0.989
rs1000002 0.2843 0.5864 7428 6685 0.649 0.708 1.357 0.528
rs10000023 -0.0657 0.5623 12144 10780 1.041 1.114 2.155 0.521
rs1000003 -0.3924 0 10779 459 0.951 0.04 0.992 0.027
rs10000030 0.2421 0.923 440 3992 0.039 0.455 0.494 0.945
rs10000037 -0.0376 1 426 7443 0.035 0.847 0.882 0.974
rs10000041 -0.2617 0.4866 8573 4944 0.835 0.555 1.39 0.374
rs10000042 0.0544 1 420 8266 0.032 0.86 0.892 0.976
rs10000049 0.2539 0 18131 630 1.36 0.048 1.407 0.022
rs1000007 0.1616 0.4697 8279 6761 0.804 0.762 1.566 0.483
rs10000073 -0.1451 0 13186 282 0.989 0.018 1.007 0.012
rs10000081 -0.2077 0 9506 468 0.817 0.044 0.861 0.034
rs10000092 -0.0764 0 8344 285 0.717 0.026 0.743 0.023
rs10000105 0.1078 1 649 12313 0.041 1.15 1.191 0.977
rs10000119 0.1057 0.9915 651 12384 0.051 1.288 1.339 0.975
rs10000124 0.0717 0.4715 13438 8296 1.154 0.855 2.008 0.406
rs10000154 -0.0082 0.5222 4539 4722 0.388 0.489 0.877 0.573
rs1000016 -0.6048 0.0114 4592 264 0.449 0.028 0.477 0.039
rs10000160 -0.2221 1 351 6258 0.027 0.652 0.679 0.974
rs10000169 0.2519 0 15270 482 1.314 0.042 1.355 0.02

Total number of rows: 730525

Table truncated, full table size 39387 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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