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Sample GSM1056473 Query DataSets for GSM1056473
Status Public on Dec 18, 2013
Title CHC480T
Sample type genomic
 
Source name CHC480T
Organism Homo sapiens
Characteristics age: 33
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.2261 0 31306 583 2.239 0.037 2.276 0.011
rs1000002 -0.0211 0 14720 506 1.077 0.041 1.118 0.024
rs10000023 0.0214 0.5225 16985 10204 1.206 1.132 2.337 0.48
rs1000003 0.1029 0.003 18061 870 1.321 0.079 1.4 0.038
rs10000030 -0.122 0.8931 522 2820 0.037 0.344 0.381 0.932
rs10000037 -0.1029 0.5321 6467 4228 0.51 0.509 1.018 0.499
rs10000041 -0.0202 0.4411 13053 5150 1.034 0.614 1.648 0.341
rs10000042 -0.325 0.9837 730 5730 0.047 0.646 0.692 0.954
rs10000049 0.1825 0 20311 406 1.312 0.022 1.335 0.011
rs1000007 0.0338 1 630 9522 0.034 1.162 1.196 0.982
rs10000073 0.0432 0.0011 17296 471 1.117 0.032 1.149 0.018
rs10000081 0.0912 0 14139 525 1.011 0.048 1.059 0.03
rs10000092 -0.05 0.4457 6064 3339 0.431 0.372 0.802 0.453
rs10000105 -0.122 0.9831 1214 9267 0.066 0.957 1.024 0.956
rs10000119 0 0
rs10000124 0.1503 0.9944 891 13357 0.051 1.502 1.553 0.978
rs10000154 0.0937 0.4378 6701 4120 0.475 0.459 0.934 0.489
rs1000016 0.089 0.0042 9190 392 0.734 0.037 0.771 0.032
rs10000160 0.0121 0.9932 717 6711 0.045 0.756 0.801 0.962
rs10000169 0.1935 0.4434 11070 6632 0.786 0.737 1.522 0.48

Total number of rows: 730525

Table truncated, full table size 40538 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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