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Sample GSM1056474 Query DataSets for GSM1056474
Status Public on Dec 18, 2013
Title CHC483T
Sample type genomic
 
Source name CHC483T
Organism Homo sapiens
Characteristics age: 42
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.041 0.4734 20865 9699 1.298 0.941 2.238 0.399
rs1000002 -0.2357 0.3724 9653 3576 0.614 0.351 0.964 0.331
rs10000023 -0.1763 0 27648 790 1.732 0.057 1.788 0.021
rs1000003 -0.1038 0.0034 17854 876 1.144 0.069 1.213 0.038
rs10000030 0.4158 0.4596 2338 3060 0.16 0.323 0.482 0.707
rs10000037 -0.0095 0.4968 8374 4942 0.58 0.518 1.099 0.464
rs10000041 -0.191 0 20927 602 1.463 0.044 1.508 0.019
rs10000042 0.0483 0.9973 862 8561 0.047 0.846 0.893 0.964
rs10000049 0.1349 0.4393 14079 7772 0.784 0.691 1.475 0.46
rs1000007 0.0072 5e-04 17784 422 1.243 0.028 1.271 0.014
rs10000073 -0.0853 0 18264 434 1.028 0.022 1.05 0.014
rs10000081 -0.1486 0.4598 7999 4849 0.498 0.474 0.972 0.484
rs10000092 0.0202 0.4464 7247 4002 0.452 0.391 0.843 0.454
rs10000105 0.057 1 1022 12250 0.045 1.106 1.151 0.974
rs10000119 0.2222 0.9755 1485 13958 0.081 1.377 1.458 0.963
rs10000124 0.0104 1 695 13895 0.031 1.372 1.403 0.986
rs10000154 0.177 0.4534 7916 5119 0.492 0.5 0.993 0.505
rs1000016 -0.0651 0.0046 9439 407 0.659 0.033 0.693 0.032
rs10000160 -0.1847 0.984 817 6611 0.047 0.654 0.7 0.955
rs10000169 0.1488 0.4575 12048 7529 0.748 0.734 1.483 0.494

Total number of rows: 730525

Table truncated, full table size 40260 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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