NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1056493 Query DataSets for GSM1056493
Status Public on Dec 18, 2013
Title CHC1121T
Sample type genomic
 
Source name CHC1121T
Organism Homo sapiens
Characteristics age: 25
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.2931 0 29494 522 2.346 0.039 2.384 0.011
rs1000002 -0.2489 0.3176 7856 2494 0.644 0.311 0.955 0.286
rs10000023 0.178 0.0129 27465 1091 2.183 0.112 2.296 0.033
rs1000003 0.1723 0.0079 16693 873 1.378 0.092 1.47 0.042
rs10000030 -0.5597 0.8082 477 1743 0.04 0.234 0.274 0.892
rs10000037 -0.2594 0.4916 5586 3252 0.491 0.432 0.923 0.459
rs10000041 0.1014 0 20048 640 1.784 0.062 1.846 0.022
rs10000042 -0.397 0.4906 4267 3364 0.335 0.421 0.756 0.572
rs10000049 0.0274 0 16235 398 1.172 0.029 1.2 0.016
rs1000007 0.3524 0.44 10862 6188 0.954 0.823 1.776 0.453
rs10000073 -0.0069 0 15074 314 1.088 0.02 1.108 0.012
rs10000081 -0.056 0 11408 461 0.908 0.049 0.957 0.034
rs10000092 -0.0358 0.0019 9181 324 0.731 0.034 0.765 0.03
rs10000105 -0.1733 0.9654 1329 7814 0.084 0.909 0.993 0.941
rs10000119 0.1719 1 698 10804 0.04 1.359 1.398 0.981
rs10000124 0.1403 0.9981 740 11905 0.041 1.497 1.538 0.982
rs10000154 -0.1229 0 8914 294 0.71 0.031 0.74 0.027
rs1000016 0.1408 0.0115 8454 423 0.753 0.047 0.799 0.039
rs10000160 -0.1127 1 509 5556 0.033 0.7 0.733 0.97
rs10000169 -0.0394 0.4754 8160 5357 0.642 0.667 1.309 0.512

Total number of rows: 730525

Table truncated, full table size 40530 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap