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Sample GSM1056509 Query DataSets for GSM1056509
Status Public on Dec 18, 2013
Title CHC1391T
Sample type genomic
 
Source name CHC1391T
Organism Homo sapiens
Characteristics age: 42
Sex: M
pathological diagnosis: frontier hepatocellular adenoma/carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.1917 0.4214 24257 9439 1.509 0.947 2.456 0.357
rs1000002 -0.2559 0.3742 9448 3453 0.604 0.347 0.951 0.332
rs10000023 -0.0149 0.0178 30313 1404 1.901 0.111 2.011 0.037
rs1000003 -0.0152 0.4429 12281 5632 0.785 0.577 1.363 0.403
rs10000030 -0.0104 0.8791 785 3374 0.043 0.366 0.41 0.925
rs10000037 -0.2434 0.9871 946 6537 0.048 0.722 0.77 0.957
rs10000041 -0.022 0 23621 674 1.657 0.038 1.696 0.015
rs10000042 -0.258 0.9723 1114 6576 0.058 0.67 0.728 0.945
rs10000049 0.1044 0 21681 660 1.233 0.035 1.267 0.018
rs1000007 0.088 0 18912 434 1.326 0.016 1.342 0.008
rs10000073 0.0155 0.0043 19207 663 1.091 0.037 1.128 0.021
rs10000081 -0.0846 0.0138 13973 844 0.874 0.066 0.94 0.048
rs10000092 -0.0155 0 11919 476 0.746 0.03 0.775 0.025
rs10000105 -0.0898 0.9908 1384 10389 0.058 0.986 1.044 0.963
rs10000119 0.1213 0.9976 1001 12746 0.042 1.309 1.351 0.979
rs10000124 -0.0497 0.9942 1045 12732 0.045 1.307 1.352 0.978
rs10000154 -0.0198 0 12449 324 0.779 0.014 0.793 0.011
rs1000016 0.0707 0.0097 10298 581 0.719 0.042 0.761 0.037
rs10000160 0.0407 0.9355 1757 7160 0.098 0.73 0.827 0.915
rs10000169 0.141 0 19342 679 1.212 0.045 1.257 0.023

Total number of rows: 730525

Table truncated, full table size 40746 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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