|
Status |
Public on Dec 24, 2013 |
Title |
hypoNP_rep3 |
Sample type |
RNA |
|
|
Channel 1 |
Source name |
NP locusts in normoxia
|
Organism |
Locusta migratoria |
Characteristics |
tissue: thoratic flight muscle population: lab
|
Treatment protocol |
Simulated 4km altitude hypoxia
|
Growth protocol |
30 centidegree, light:dark=14h:10h, wheat bran as food
|
Extracted molecule |
total RNA |
Extraction protocol |
RNeasy Mini Kit (Qiagen)
|
Label |
Cy3
|
Label protocol |
40 µg of total RNA were primed with 2.5 µl of 2 µg/µl oligo(dT) at 68°C for 5 min, then reversed transcribed at 42°C for 3 h in the presence of 400 U SuperScript II RTase (Invitrogen), and 100 µM each dATP, dCTP, dGTP, with 25 µM dTTP, 25 µM aa-dUTP
|
|
|
Channel 2 |
Source name |
NP locusts in hypoxia
|
Organism |
Locusta migratoria |
Characteristics |
tissue: thoratic flight muscle population: lab
|
Treatment protocol |
Simulated 4km altitude hypoxia
|
Growth protocol |
30 centidegree, light:dark=14h:10h, wheat bran as food
|
Extracted molecule |
total RNA |
Extraction protocol |
RNeasy Mini Kit (Qiagen)
|
Label |
Cy5
|
Label protocol |
40 µg of total RNA were primed with 2.5 µl of 2 µg/µl oligo(dT) at 68°C for 5 min, then reversed transcribed at 42°C for 3 h in the presence of 400 U SuperScript II RTase (Invitrogen), and 100 µM each dATP, dCTP, dGTP, with 25 µM dTTP, 25 µM aa-dUTP
|
|
|
|
Hybridization protocol |
Oligoarray control targets and hybridization buffer were added, and samples were applied to microarrays enclosed in Agilent SureHyb-enabled hybridization chambers. After hybridization, slides were washed sequentially.
|
Scan protocol |
Following instructions of GenePix 4000B Array Scanner; extract intensity information using GenePix Pro 6
|
Description |
biological replicate 3 of 6
|
Data processing |
Background corrected and LOWESS normalized; R plus limma package
|
|
|
Submission date |
Jan 07, 2013 |
Last update date |
Dec 24, 2013 |
Contact name |
Dejian Zhao |
E-mail(s) |
dejian.zhao@yale.edu
|
Organization name |
Yale School of Medicine
|
Department |
Genetics
|
Street address |
333 Cedar St
|
City |
New Haven |
State/province |
CT |
ZIP/Postal code |
06510 |
Country |
USA |
|
|
Platform ID |
GPL14920 |
Series (1) |
GSE43327 |
Locust flight muscle: Tibetan Plateau population vs. North China Plain population |
|