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Sample GSM106190 Query DataSets for GSM106190
Status Public on Sep 27, 2006
Title ALLREZ.P24
Sample type RNA
 
Source name bone marrow (freshly isolated mononuclear cells)
Organism Homo sapiens
Characteristics Age at relapse diagnosis [years]: 16.7
Sex: male
Immunophenotype: pre-B
Time of relapse: late
Site of relapse: combined BM
ALL-REZ BFM risk group: intermediate (S2)
Peripheral blast count at relapse diagnosis per microliter: 2592
Minimal residual disease (after 2 induction cycles): low
Genetic features: not found
S and G2/M phase cells [%]: NA
Frontline therapy: ALL-BFM 95 MR
Extracted molecule total RNA
Label Biotin
 
Description first relapse acute lymphocytic leukemia
Data processing Probe level normalization: calibration and variance stabilization (Huber et al. PMID: 12169536). Probe-set summarization: median polish on the normalized data (Irrizary et al. PMID: 12582260).
 
Submission date Apr 21, 2006
Last update date Nov 14, 2018
Contact name Renate Kirschner-Schwabe
E-mail(s) R.Kirschner@charite.de
Phone +4930450566088
Fax +4930450566946
URL http://www.charite.de/paedonko
Organization name Charité - Universitätsmedizin Berlin
Department Pediatric Oncology/Hematology
Lab Molecular Genetics
Street address Augustenburger Platz 1
City Berlin
ZIP/Postal code 12167
Country Germany
 
Platform ID GPL96
Series (1)
GSE4698 Molecular characterization of very early relapsed childhood ALL
Relations
Reanalyzed by GSE122505

Data table header descriptions
ID_REF
VALUE Normalized and summarized probeset expression value on additive arcsinh (log-like) scale

Data table
ID_REF VALUE
1007_s_at 3.20430961507973
1053_at 2.16424618609011
117_at 2.06225443215380
121_at 3.53355653137746
1255_g_at 0.91482639373739
1294_at 3.54791581744934
1316_at 1.84870952782898
1320_at 1.36521594842535
1405_i_at 2.29470968975260
1431_at 0.805886980504533
1438_at 2.24848938632001
1487_at 2.65356178123943
1494_f_at 2.22197210291464
1598_g_at 3.24524947359913
160020_at 2.9645364799795
1729_at 2.28791508899786
1773_at 1.98889842876450
177_at 1.64045607413855
179_at 3.58695792516787
1861_at 1.75642905510506

Total number of rows: 22283

Table truncated, full table size 608 Kbytes.




Supplementary file Size Download File type/resource
GSM106190.CEL.gz 3.4 Mb (ftp)(http) CEL
GSM106190.EXP.gz 490 b (ftp)(http) EXP

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