NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM106373 Query DataSets for GSM106373
Status Public on Feb 01, 2009
Title -gcn4, YNB + 0.1 mM 3AT, replicate 1
Sample type RNA
 
Source name S288C gcn4-delta MAT a
Organism Saccharomyces cerevisiae
Characteristics genetic and environmental variation indicated in Sample_title
Extracted molecule total RNA
Extraction protocol Strains were aerobically cultured at 30C and pH 5 in a chemostat diluted at 0.10 hr^-1. Samples were quenced in ice, spun for 3 min, and frozen on liquid N2. Total RNA was extracted with trizol from cells ground at cold temperatures.
Label biotin
Label protocol standard Affymetrix procedures
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description -gcn4, YNB + 0.1 mM 3AT, replicate 1
Data processing Bioconductor with RMA background correction, qspline normalization, and Li-Wong expression value summaries
 
Submission date Apr 24, 2006
Last update date Oct 22, 2008
Contact name Joel Moxley
E-mail(s) jfmoxley@mit.edu
Organization name MIT
Street address 77 Massachusettes Ave
City Cambridge
State/province MA
ZIP/Postal code 02139
Country USA
 
Platform ID GPL2529
Series (1)
GSE4709 Gcn4p-mediated transcriptional stress response

Data table header descriptions
ID_REF
VALUE Li-Wong summarized expression value

Data table
ID_REF VALUE
1769308_at 639.037862
1769309_at 65.76725935
1769310_at 9.52517485
1769311_at 1587.342217
1769312_at 713.8582206
1769313_at 564.315978
1769314_at 740.7767214
1769315_at 5.495296984
1769316_s_at 5.659302283
1769317_at 336.4530756
1769318_at 7.441737824
1769319_at 746.2910624
1769320_at 236.1374059
1769321_at 380.2903787
1769322_s_at 176.2368471
1769323_at 814.253128
1769324_at 395.0703165
1769325_at 263.6814586
1769326_at 10.60151759
1769327_at 17.77854698

Total number of rows: 10928

Table truncated, full table size 246 Kbytes.




Supplementary file Size Download File type/resource
GSM106373.CEL.gz 1.5 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap