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Sample GSM1070308 Query DataSets for GSM1070308
Status Public on Jun 27, 2013
Title Cohort2_Striatum_Methylphenidate group_Sample 1
Sample type RNA
 
Source name Striatum, Methylphenidate
Organism Rattus norvegicus
Characteristics strain: Wistar
pretreatment drug & dose: Methylphenidate (5 mg/kg)
cpp conditioning drug and dose: Methylphenidate (5 mg/kg)
self-administration (drug volume/infusion): 0.25 mg/0.1 ml infusion, methylphenidate
tissue: Striatum
Treatment protocol Rats were acclimatized to their housing conditions prior to drug or saline administration. Drug treatment (twice daily, intraperitoneal [i.p.]) commenced when rats were 6 weeks old, and lasted for 7 days. Rats were divided into two groups: (cohort 1) 4 groups of rats (n=12 rats per group) given saline only (1 mg/kg, i.p.,”drug-naive” rats); and (cohort 2): 3 groups of rats given either methamphetamine, amphetamine or methylphenidate (5 mg/kg,i.p., “drug-pretreated”) prior to behavioral assays (Conditioned Place Preference and Self-administration tests).
Growth protocol Male Wistar rats ( 4 weeks old) were obtained from Orient Bio Korea. The animals were housed in an environmentally-controlled animal room (temperature [22 ± 2°C] and humidity- [55 ± 5%], 12 hr/12 hr light/dark [6 AM-6 PM] cycle), in groups (during drug treatment and CPP experiments) and individually thereafter during self-administration tests. All experiments were performed in accordance with the Principles of Laboratory Animal Care (NIH) and the Animal Care and Use Guidelines of Sahmyook University, Korea.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the Trizol reagent (Invitrogen, Carlsbad, CA, USA), according to the manufacturer's instructions.
Label biotin
Label protocol RNA was converted to cDNA and transcribed into cRNA in the presence of biotinylated ribonucleotides, according to standard Affymetrix protocols (Affymetrix ‘Expression Analysis Technical Manual’, #701021 Rev. 5).
 
Hybridization protocol Hybridization was carried out using Affymetrix GeneChip Rat Genome 230 2.0 oligonucleotide arrays (Affymetrix, Santa Clara,CA, USA). The hybridized probe array was stained and washed with GeneChip hybridization, wash and stain kit using the Fluidics Station 450 (Affymetrix).
Scan protocol The stained GeneChip probe array was scanned with a GeneChip Scanner 3000+7G (Affymetrix).
Description Co2_STR_Mph_1
Data processing The signal intensity of the gene expression level was calculated by the Expressin Console Software, Version 1.1 (Affymetrix) based on the MAS 5.0 algorithm.
 
Submission date Jan 25, 2013
Last update date Jun 27, 2013
Contact name Minsoo Noh
E-mail(s) minsoo@alum.mit.edu
Phone 82-2-880-2481
Organization name Seoul National University
Department Pharmacy
Lab Systems Pharmacology
Street address 1 Gwanak-ro, Gwanak-gu
City Seoul
ZIP/Postal code 151-742
Country South Korea
 
Platform ID GPL1355
Series (1)
GSE43748 Transcriptional profiles of psychostimulant reinforcement in rats

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 766.477 P 5.16732e-05
AFFX-BioB-M_at 1327.56 P 4.42873e-05
AFFX-BioB-3_at 874.615 P 4.42873e-05
AFFX-BioC-5_at 2052.98 P 5.16732e-05
AFFX-BioC-3_at 2854.83 P 4.42873e-05
AFFX-BioDn-5_at 7651.24 P 5.16732e-05
AFFX-BioDn-3_at 10342.6 P 4.42873e-05
AFFX-CreX-5_at 29685.6 P 5.16732e-05
AFFX-CreX-3_at 27277.5 P 4.42873e-05
AFFX-DapX-5_at 810.278 P 5.16732e-05
AFFX-DapX-M_at 2640.05 P 8.14279e-05
AFFX-DapX-3_at 5472.99 P 4.42873e-05
AFFX-LysX-5_at 187.828 P 4.42873e-05
AFFX-LysX-M_at 406.429 P 9.4506e-05
AFFX-LysX-3_at 763.009 P 5.16732e-05
AFFX-PheX-5_at 271.844 P 0.000445901
AFFX-PheX-M_at 417.636 P 4.42873e-05
AFFX-PheX-3_at 463.172 P 4.42873e-05
AFFX-ThrX-5_at 118.975 P 0.0020226
AFFX-ThrX-M_at 332.348 P 0.000169227

Total number of rows: 31099

Table truncated, full table size 955 Kbytes.




Supplementary file Size Download File type/resource
GSM1070308_Co2-STR_MPH_5_1.CEL.gz 4.0 Mb (ftp)(http) CEL
GSM1070308_Co2-STR_MPH_5_1.mas5.CHP.gz 168.9 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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