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Sample GSM1105901 Query DataSets for GSM1105901
Status Public on Aug 17, 2014
Title skin-J3-6W-3
Sample type RNA
 
Source name skin-J3-6W-3
Organism Mus musculus
Characteristics strain: C3H/HeJ
tissue: skin
treatment: jak3i
treatment time: 6
Extracted molecule total RNA
Extraction protocol Qiagen miRNeasy with on-column DNase digestion
Label biotin
Label protocol 3' IVT Express Kit, Affymetrix
 
Hybridization protocol Following fragmentation, 10 ug of cDNA was hybridized for 16 hr at 45C on GeneChip Mouse Genome 430 2.0. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Hewlett-Packard GeneArray Scanner 7G3000.
Data processing The data were analyzed with Bioconductor/R and were RMA normalized.
 
Submission date Mar 26, 2013
Last update date Aug 17, 2014
Contact name Ali Jabbari
Organization name University of Iowa
Street address 200 Hawkins Dr, 40025 PFP
City Iowa City
State/province IA
ZIP/Postal code 52242
Country USA
 
Platform ID GPL1261
Series (1)
GSE45514 Treatment of established mouse AA with topical JAK inhibitors

Data table header descriptions
ID_REF
VALUE RMA normalized log2 (expression values)

Data table
ID_REF VALUE
1415670_at 8.913720909
1415671_at 11.26255532
1415672_at 11.42676454
1415673_at 10.04127413
1415674_a_at 9.602567804
1415675_at 8.762270673
1415676_a_at 10.88996862
1415677_at 9.458857079
1415678_at 10.65734324
1415679_at 11.25059492
1415680_at 8.635092971
1415681_at 9.76068289
1415682_at 8.180600668
1415683_at 10.97799291
1415684_at 9.208026947
1415685_at 8.145159763
1415686_at 10.50531562
1415687_a_at 12.51441605
1415688_at 10.48423496
1415689_s_at 9.503331666

Total number of rows: 45101

Table truncated, full table size 1026 Kbytes.




Supplementary file Size Download File type/resource
GSM1105901_J3-6W-3.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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