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GEO help: Mouse over screen elements for information. |
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Status |
Public on Aug 24, 2007 |
Title |
Normal primary thyroid cells, thyroid #3, IL1-beta treatment |
Sample type |
RNA |
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Source name |
thyroid
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Organism |
Homo sapiens |
Characteristics |
Normal primary thyroid cells, IL1-beta treatment
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Extracted molecule |
total RNA |
Extraction protocol |
Total RNA was extracted from the tissue lysate using an RNeasy kit (Qiagen).
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Label |
biotin
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Label protocol |
5 µg of total RNA was processed to produce biotinylated cRNA targets.
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Hybridization protocol |
standard Affymetrix procedures
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Scan protocol |
standard Affymetrix procedures
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Description |
Normal primary thyroid cells, thyroid #3, IL1-beta treatment
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Data processing |
Ann Arbor quantile-normalized trimmed-mean method
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Submission date |
Jun 12, 2006 |
Last update date |
Aug 24, 2007 |
Contact name |
Rork Kuick |
E-mail(s) |
rork@umich.edu
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Phone |
734-936-9241
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Organization name |
University of Michigan
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Street address |
University of Michigan, SPH II, 1415 Washington Heights, Room M2533
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City |
Ann Arbor |
State/province |
MI |
ZIP/Postal code |
48109-2029 |
Country |
USA |
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Platform ID |
GPL96 |
Series (1) |
GSE5054 |
Effect of INF-gamma and IL1-beta on thyroid cells |
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Data table header descriptions |
ID_REF |
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VALUE |
quantile-normalized trimmed-mean, log-transformed with log(max(x+50,0)+50) using base 10 logarithms |
Data table |
ID_REF |
VALUE |
201963_at |
3.345177617 |
207275_s_at |
3.324899497 |
202912_at |
3.532499586 |
205013_s_at |
2.959994838 |
206513_at |
2.598790507 |
205568_at |
2.58546073 |
205870_at |
2.315970345 |
202357_s_at |
3.463146137 |
207571_x_at |
2.712649702 |
210785_s_at |
2.651278014 |
221245_s_at |
2.970811611 |
220066_at |
2.523746467 |
205467_at |
2.522444234 |
209310_s_at |
2.471291711 |
1405_i_at |
2.36361198 |
204655_at |
2.806179974 |
208075_s_at |
3.194514342 |
214038_at |
2.376576957 |
205692_s_at |
2.51851394 |
204440_at |
3.51375015 |
Total number of rows: 22277
Table truncated, full table size 496 Kbytes.
Supplementary file |
Size |
Download |
File type/resource |
GSM113936.CEL.gz |
3.5 Mb |
(ftp)(http) |
CEL |
Processed data included within Sample table |
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