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Sample GSM11559 Query DataSets for GSM11559
Status Public on Jan 01, 2004
Title V5-P418
Sample type RNA
 
Source name bone marrow
Organism Homo sapiens
Extracted molecule total RNA
 
Description Following Ficoll-Hypaque gradient centrifugation, plasma cells obtained from the bone marrow were isolated from the mononuclear cell fraction by immunomagnetic bead selection using a monoclonal mouse anti-human CD138 antibody (Miltenyi-Biotec, Auburn, CA).
More than 90 percent of the cells used for gene expression profiling were plasma cells, as shown by two-color flow cytometry using CD138+/CD45- and CD38+/CD45- markers, the presence of cytoplasmic immunoglobulin light chains by immunocytochemistry, and morphology by Wright-Giemsa staining.
MRI-lytic-lesion sample
Keywords = multiple myeloma, osteolytic lesions, MRI, osteoblast, mesenchymal stem cell, Wnt signaling, DKK1
 
Submission date Oct 16, 2003
Last update date Mar 16, 2009
Contact name John D. Shaughnessy
E-mail(s) jshaughnessy@uams.edu
Phone 1-501-296-1503, X1457
Fax 1-501-686-6442
URL http://lambertlab.uams.edu/
Organization name Myeloma Institute for Research and Therapy
Department Division of Basic Sciences
Lab Donna D. and Donald M. Lambert Laboratory of Myeloma Genetics
Street address 4301 West Markham St., Slot 776
City Little Rock
State/province AR
ZIP/Postal code 72205
Country USA
 
Platform ID GPL8300
Series (2)
GSE754 MRI-lytic-lesion
GSE755 MRI lytic and no lytic lesions

Data table header descriptions
ID_REF
VALUE 'signal' a measure of the abundance of a transcript
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
100_g_at 1518.50 P 3.815e-03
1000_at 4644.20 P 4.863e-03
1001_at 83.20 A 0.45
1002_f_at 46.80 A 0.74
1003_s_at 219.50 A 0.66
1004_at 570.50 A 0.32
1005_at 11980.30 P 2.19e-04
1006_at 28.10 A 0.54
1007_s_at 2578.00 P 4.863e-03
1008_f_at 23204.50 P 9.59e-04
1009_at 11482.40 P 4.68e-04
101_at 1693.70 P 0.02
1010_at 54.00 A 0.73
1011_s_at 5902.30 P 2.66e-04
1012_at 376.20 P 3.067e-03
1013_at 364.70 P 2.617e-03
1014_at 5466.90 P 8.529e-03
1015_s_at 193.80 A 0.19
1016_s_at 30.70 A 0.69
1017_at 347.60 P 4.863e-03

Total number of rows: 12625

Table truncated, full table size 307 Kbytes.




Supplementary data files not provided

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