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GEO accession:
Sample GSM116939
Query DataSets for GSM116939
Status
Public on Sep 30, 2006
Title
NA12144_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 4
Biomaterial provider
Coriell NA12144
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA12144
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
19.561
0.032927
0.000000
SNP_A-1780618
BB
0.007813
10.666
0.091284
0.016106
SNP_A-1780632
BB
0.007813
19.104
0.017060
0.020236
SNP_A-1780654
AA
0.007813
24.297
0.983516
1.000000
SNP_A-4192495
AB
0.093750
1.783
0.455399
0.410242
SNP_A-4192498
AB
0.137695
2.550
0.184170
0.430750
SNP_A-1780732
BB
0.015625
13.241
0.000000
0.018919
SNP_A-1780848
AA
0.023438
21.070
0.912351
1.000000
SNP_A-1780985
BB
0.007813
12.336
0.000000
0.000000
SNP_A-1781022
AA
0.007813
8.063
1.000000
1.000000
SNP_A-1781076
BB
0.023438
15.073
0.032828
0.000000
SNP_A-1781249
AB
0.007813
10.864
0.581444
0.466258
SNP_A-1781276
AB
0.007813
9.710
0.527533
0.584369
SNP_A-1781302
AB
0.007813
15.099
0.523551
0.578521
SNP_A-1781510
AA
0.007813
29.312
0.969508
1.000000
SNP_A-4192564
BB
0.132813
8.118
0.000000
0.185976
SNP_A-1781614
AB
0.023438
14.901
0.668675
0.506317
SNP_A-1781633
AB
0.007813
9.098
0.421975
0.417572
SNP_A-1781764
AB
0.007813
14.922
0.516757
0.415167
SNP_A-1781829
AA
0.007813
10.569
0.947976
0.916437
Total number of rows:
262264
Table truncated, full table size
12973 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116939.CEL.gz
43.4 Mb
(ftp)
(http)
CEL
GSM116939.raw.txt.gz
26.3 Mb
(ftp)
(http)
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