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GEO accession:
Sample GSM117079
Query DataSets for GSM117079
Status
Public on Sep 30, 2006
Title
NA18943_Nsp_COMM
Sample type
genomic
Source name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism
Homo sapiens
Characteristics
Gender: Male Cell lot number: 1
Biomaterial provider
Coriell NA18943
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA18943
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Last update date
Apr 17, 2008
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.023438
14.385
0.070039
0.000000
SNP_A-1780618
AB
0.023438
5.222
0.400350
0.510149
SNP_A-1780632
AB
0.312500
5.511
0.893258
0.515873
SNP_A-1780654
AA
0.007813
28.004
1.000000
1.000000
SNP_A-4192495
AB
0.007813
11.049
0.440244
0.468419
SNP_A-4192498
BB
0.000488
17.866
0.000000
0.000000
SNP_A-1780732
BB
0.015625
16.640
0.000000
0.067935
SNP_A-1780848
BB
0.093750
14.157
0.000000
0.284856
SNP_A-1780985
AB
0.007813
3.035
0.503676
0.617296
SNP_A-1781022
AB
0.078125
3.099
0.535755
1.000000
SNP_A-1781076
AA
0.007813
17.256
0.977146
0.932891
SNP_A-1781249
AA
0.039063
8.365
0.962815
0.837074
SNP_A-1781276
AA
0.023438
11.659
0.856828
0.927318
SNP_A-1781302
BB
0.023438
9.789
0.218085
0.037624
SNP_A-1781510
AA
0.007813
29.074
0.990482
1.000000
SNP_A-4192564
BB
0.093750
7.556
0.009361
0.422222
SNP_A-1781614
AA
0.007813
20.970
1.000000
0.949009
SNP_A-1781633
AA
0.007813
11.715
1.000000
1.000000
SNP_A-1781764
AB
0.007813
16.906
0.477230
0.504415
SNP_A-1781829
AA
0.007813
8.361
0.936308
0.815320
Total number of rows:
262264
Table truncated, full table size
12960 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM117079.CEL.gz
43.0 Mb
(ftp)
(http)
CEL
GSM117079.raw.txt.gz
26.0 Mb
(ftp)
(http)
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