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Sample GSM1187349 Query DataSets for GSM1187349
Status Public on Jul 18, 2013
Title TIA_IV_2 [I]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 4h
drug: Tianeptine
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5216513005_E
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48951 Psychotropic drug-induced gene expression alterations in mouse striatum I
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.407080874
ILMN_1238674 7.389017194
ILMN_2454720 7.529475721
ILMN_3062534 8.053296209
ILMN_3140158 10.97734934
ILMN_1240307 7.672649189
ILMN_1251139 7.823823389
ILMN_2935307 7.371671078
ILMN_2429159 7.571040923
ILMN_2754227 7.910294706
ILMN_1225693 8.001670218
ILMN_1234015 7.63649011
ILMN_2603725 12.76290105
ILMN_2664884 8.946962604
ILMN_1229397 8.783499247
ILMN_1225873 11.95236795
ILMN_3003575 7.132886657
ILMN_1257702 12.17492107
ILMN_2899591 10.16768232
ILMN_2658355 7.308743124

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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