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Sample GSM1187450 Query DataSets for GSM1187450
Status Public on Jul 18, 2013
Title HAL_IV_2 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 4h
drug: Haloperidol
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5426836062_F
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.638772205
ILMN_1238674 7.495492391
ILMN_2454720 7.469198313
ILMN_3062534 7.929516248
ILMN_3140158 11.35689941
ILMN_1240307 8.024245282
ILMN_1251139 7.668081245
ILMN_2935307 7.644313219
ILMN_2429159 7.947295612
ILMN_2754227 7.944439746
ILMN_1225693 8.317418669
ILMN_1234015 7.904832958
ILMN_2603725 12.88509708
ILMN_2664884 9.098192632
ILMN_1229397 8.972351487
ILMN_1225873 12.39647754
ILMN_3003575 7.595276307
ILMN_1257702 12.4957729
ILMN_2899591 10.24103514
ILMN_2658355 7.280463817

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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