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Sample GSM1187469 Query DataSets for GSM1187469
Status Public on Jul 18, 2013
Title HYD_II_2 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 2h
drug: Hydroxizine
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5513075008_A
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 8.015693476
ILMN_1238674 7.483248494
ILMN_2454720 7.517891373
ILMN_3062534 7.747435625
ILMN_3140158 11.81333823
ILMN_1240307 7.44907179
ILMN_1251139 7.961910946
ILMN_2935307 7.666956485
ILMN_2429159 7.9013092
ILMN_2754227 8.416816869
ILMN_1225693 7.742434639
ILMN_1234015 7.403748195
ILMN_2603725 12.59408171
ILMN_2664884 9.781758151
ILMN_1229397 8.980013912
ILMN_1225873 12.7250676
ILMN_3003575 7.405521182
ILMN_1257702 12.52619158
ILMN_2899591 10.02276236
ILMN_2658355 7.75151289

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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