NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1187477 Query DataSets for GSM1187477
Status Public on Jul 18, 2013
Title HYD_IV_1 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 4h
drug: Hydroxizine
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5513075009_C
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.889067411
ILMN_1238674 7.520086222
ILMN_2454720 7.603530453
ILMN_3062534 7.710490888
ILMN_3140158 11.62534461
ILMN_1240307 7.459249349
ILMN_1251139 7.809078552
ILMN_2935307 7.79084358
ILMN_2429159 7.677359101
ILMN_2754227 8.100620509
ILMN_1225693 7.412808087
ILMN_1234015 7.712150786
ILMN_2603725 12.89908711
ILMN_2664884 9.830150664
ILMN_1229397 9.484693974
ILMN_1225873 13.06252814
ILMN_3003575 7.487542727
ILMN_1257702 12.53345719
ILMN_2899591 9.830400392
ILMN_2658355 7.895812226

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap