NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1187489 Query DataSets for GSM1187489
Status Public on Jul 18, 2013
Title MIA_II_3 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 2h
drug: Mianserin
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5513075014_C
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.559413259
ILMN_1238674 7.561191934
ILMN_2454720 7.622712722
ILMN_3062534 7.302284264
ILMN_3140158 11.09939594
ILMN_1240307 7.574747735
ILMN_1251139 7.966066185
ILMN_2935307 7.661307169
ILMN_2429159 7.932235021
ILMN_2754227 8.020338849
ILMN_1225693 7.895337618
ILMN_1234015 7.615735797
ILMN_2603725 12.62323735
ILMN_2664884 9.04536909
ILMN_1229397 9.010750206
ILMN_1225873 12.52619158
ILMN_3003575 7.56402156
ILMN_1257702 12.44450169
ILMN_2899591 10.66675881
ILMN_2658355 7.527566176

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap