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Sample GSM1187500 Query DataSets for GSM1187500
Status Public on Jul 18, 2013
Title KLO_VIII_2 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 8h
drug: Clozapine
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5513075019_B
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.849068875
ILMN_1238674 7.747114591
ILMN_2454720 7.516959617
ILMN_3062534 7.802202223
ILMN_3140158 11.25875348
ILMN_1240307 7.698542826
ILMN_1251139 7.892444128
ILMN_2935307 7.587876673
ILMN_2429159 7.75743244
ILMN_2754227 7.981473484
ILMN_1225693 7.584624034
ILMN_1234015 7.679079197
ILMN_2603725 12.96098428
ILMN_2664884 9.060264568
ILMN_1229397 9.499702724
ILMN_1225873 12.36878411
ILMN_3003575 7.007089377
ILMN_1257702 12.53892958
ILMN_2899591 10.61361423
ILMN_2658355 7.529808118

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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