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Sample GSM1187524 Query DataSets for GSM1187524
Status Public on Jul 18, 2013
Title DIA_I_2 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 1h
drug: Diazepam
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5513075029_B
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.694837461
ILMN_1238674 7.723745177
ILMN_2454720 7.724767941
ILMN_3062534 7.523535417
ILMN_3140158 11.47855057
ILMN_1240307 7.849627833
ILMN_1251139 7.475947927
ILMN_2935307 7.808398043
ILMN_2429159 7.932372076
ILMN_2754227 7.809568905
ILMN_1225693 7.57403003
ILMN_1234015 7.321695029
ILMN_2603725 12.66815303
ILMN_2664884 9.373684846
ILMN_1229397 9.386396693
ILMN_1225873 13.03779959
ILMN_3003575 7.499336675
ILMN_1257702 12.46624666
ILMN_2899591 10.36683824
ILMN_2658355 7.870700043

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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