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Sample GSM1187527 Query DataSets for GSM1187527
Status Public on Jul 18, 2013
Title HYD_I_3 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 1h
drug: Hydroxizine
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5513075029_E
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.593927274
ILMN_1238674 7.69995433
ILMN_2454720 7.63976273
ILMN_3062534 7.865227349
ILMN_3140158 11.5566137
ILMN_1240307 7.520131699
ILMN_1251139 7.825604768
ILMN_2935307 7.780128823
ILMN_2429159 7.884948529
ILMN_2754227 8.005623941
ILMN_1225693 7.52107128
ILMN_1234015 7.557170517
ILMN_2603725 12.7034578
ILMN_2664884 9.643993584
ILMN_1229397 9.306992571
ILMN_1225873 12.93931257
ILMN_3003575 7.478305945
ILMN_1257702 12.3933586
ILMN_2899591 10.0477876
ILMN_2658355 7.947927551

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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