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Sample GSM1187534 Query DataSets for GSM1187534
Status Public on Jul 18, 2013
Title SAL_VIII_4 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 8h
drug: Saline
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5513075032_F
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.681570811
ILMN_1238674 8.025143167
ILMN_2454720 7.700276034
ILMN_3062534 7.733562195
ILMN_3140158 11.60027803
ILMN_1240307 7.607482128
ILMN_1251139 7.836398804
ILMN_2935307 7.717145108
ILMN_2429159 7.666977106
ILMN_2754227 8.141063479
ILMN_1225693 7.401438741
ILMN_1234015 7.4466076
ILMN_2603725 12.53274646
ILMN_2664884 9.353561953
ILMN_1229397 9.280338961
ILMN_1225873 12.85604686
ILMN_3003575 7.338345555
ILMN_1257702 12.84335168
ILMN_2899591 10.42124162
ILMN_2658355 7.526894357

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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