NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1187540 Query DataSets for GSM1187540
Status Public on Jul 18, 2013
Title BUS_VIII_3 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 8h
drug: Buspirone
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5513075033_F
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.476960962
ILMN_1238674 7.640215905
ILMN_2454720 7.771990498
ILMN_3062534 7.679626142
ILMN_3140158 11.48978524
ILMN_1240307 7.591957689
ILMN_1251139 7.696087161
ILMN_2935307 7.622297998
ILMN_2429159 7.973817119
ILMN_2754227 7.74508212
ILMN_1225693 7.733400708
ILMN_1234015 7.540430926
ILMN_2603725 12.4928699
ILMN_2664884 9.636869087
ILMN_1229397 8.528291751
ILMN_1225873 12.88509708
ILMN_3003575 7.628717184
ILMN_1257702 12.8655094
ILMN_2899591 10.20084018
ILMN_2658355 7.481217791

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap