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Sample GSM1187552 Query DataSets for GSM1187552
Status Public on Jul 18, 2013
Title TWE_IV_3 [II]
Sample type RNA
 
Source name Striatum of 6-10 week old C57BL/6J mice
Organism Mus musculus
Characteristics strain: C57Bl/6J
timepoint: 4h
drug: Tween 80
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays.
 
Hybridization protocol Standard Illumina hybridization protocol.
Scan protocol Standard Illumina scanning protocol.
Description 5513075046_F
Data processing The data were normalised using quantile normalisation with preprocessCore in R.
 
Submission date Jul 17, 2013
Last update date Jul 18, 2013
Contact name Marcin Piechota
E-mail(s) marpiech@if-pan.krakow.pl
Phone (+4812) 6623328
Organization name Institute of Pharmacology PAS
Department Molecular Neuropharmacology
Street address Smetna 12
City Krakow
ZIP/Postal code 31-343
Country Poland
 
Platform ID GPL6887
Series (2)
GSE48954 Psychotropic drug-induced gene expression alterations in mouse striatum II
GSE48955 Psychotropic drug-induced gene expression alterations in mouse striatum

Data table header descriptions
ID_REF
VALUE quantile normalized signal intensity

Data table
ID_REF VALUE
ILMN_1243094 7.789574996
ILMN_1238674 7.55678243
ILMN_2454720 7.562730164
ILMN_3062534 7.784906975
ILMN_3140158 11.05973826
ILMN_1240307 7.74864033
ILMN_1251139 7.729561529
ILMN_2935307 7.570131952
ILMN_2429159 7.760692687
ILMN_2754227 7.954088293
ILMN_1225693 7.997216132
ILMN_1234015 7.458004518
ILMN_2603725 12.47717173
ILMN_2664884 9.021135467
ILMN_1229397 9.305430401
ILMN_1225873 12.47570292
ILMN_3003575 7.266139136
ILMN_1257702 12.40167679
ILMN_2899591 10.54362452
ILMN_2658355 7.659612967

Total number of rows: 45281

Table truncated, full table size 1100 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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