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Sample GSM1196388 Query DataSets for GSM1196388
Status Public on Apr 29, 2014
Title ACC37
Sample type genomic
 
Source name ACC37
Organism Homo sapiens
Characteristics cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Jul 26, 2013
Last update date Apr 29, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL8887
Series (2)
GSE49276 SNP data from 45 adrenocortical carcinomas
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
200003 -0.0444 0 9109 426 1.048 0.035 1.083 0.021
200006 0.1108 0.3703 12254 8179 1.402 0.861 2.263 0.351
200047 0.3021 0.0139 5155 566 0.588 0.054 0.642 0.058
200050 0.0939 0.9924 499 11506 0.029 1.277 1.306 0.986
200052 0.1481 0.9985 406 9835 0.02 1.009 1.03 0.987
200053 0.2909 0 10444 1494 1.202 0.148 1.35 0.078
200070 -0.0352 0 4172 174 0.473 0 0.473 0
200078 0.1571 0.9832 2349 18391 0.219 1.895 2.114 0.927
200087 0.3288 0.9947 740 12255 0.057 1.308 1.364 0.973
200091 0.075 2e-04 14443 663 1.668 0.055 1.723 0.021
200096 0.1553 1 781 9423 0.066 1.005 1.071 0.958
200124 0.1584 0.9908 671 9087 0.053 0.969 1.023 0.965
200199 0.1707 0.5009 4280 4331 0.485 0.463 0.949 0.485
200240 -0.2005 0 9614 603 1.128 0.038 1.167 0.021
200251 -0.0539 0 8202 213 0.943 0.013 0.956 0.009
200258 -0.356 0.849 2649 8851 0.284 0.942 1.226 0.814
200260 -0.553 0.1595 3411 1697 0.381 0.166 0.547 0.262
200261 -0.04 0.9149 1631 9825 0.164 1.047 1.211 0.901
200262 -0.0874 0.1048 4709 906 0.536 0.091 0.626 0.107
200519 0.2632 0.4631 12014 11257 1.369 1.19 2.559 0.455

Total number of rows: 620901

Table truncated, full table size 33842 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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