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Sample GSM1196397 Query DataSets for GSM1196397
Status Public on Apr 29, 2014
Title ACC14
Sample type genomic
 
Source name ACC14
Organism Homo sapiens
Characteristics cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Jul 26, 2013
Last update date Apr 29, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL13135
Series (2)
GSE49276 SNP data from 45 adrenocortical carcinomas
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.0632 0.9978 548 14650 0.029 1.56 1.589 0.988
rs1000002 -0.3576 0.9851 615 6851 0.045 0.748 0.793 0.962
rs10000023 0.0197 0.3265 14603 7459 1.482 0.772 2.254 0.306
rs1000003 0.101 0.0142 12370 1143 1.303 0.097 1.4 0.047
rs10000030 -0.5963 0.8992 331 2235 0.026 0.249 0.275 0.934
rs10000037 -0.4229 0 6627 314 0.749 0.015 0.764 0.013
rs10000041 -0.0635 0.0058 13901 857 1.58 0.066 1.646 0.027
rs10000042 -0.3801 0.9966 457 5919 0.036 0.628 0.664 0.964
rs10000049 -0.0201 1 670 10776 0.042 1.061 1.103 0.975
rs1000007 -0.1322 0 9973 424 1.131 0.022 1.154 0.013
rs10000073 -0.0375 9e-04 11364 528 1.057 0.029 1.086 0.018
rs10000081 -0.1065 0.0065 8498 673 0.869 0.056 0.925 0.041
rs10000092 -0.3555 0.0086 5677 418 0.581 0.033 0.613 0.036
rs10000105 -0.0376 1 595 10574 0.035 1.041 1.076 0.979
rs10000119 0.0388 0.9881 731 11521 0.053 1.226 1.279 0.972
rs10000124 -0.0771 0.9943 650 12052 0.044 1.283 1.327 0.978
rs10000154 -0.0202 0.4821 4093 4390 0.411 0.459 0.87 0.535
rs1000016 0.181 0.0068 6898 550 0.779 0.042 0.822 0.034
rs10000160 -0.0702 0.998 497 6755 0.038 0.717 0.755 0.966
rs10000169 0.0402 0 11228 340 1.149 0.016 1.166 0.009

Total number of rows: 730525

Table truncated, full table size 40456 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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