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Sample GSM1196406 Query DataSets for GSM1196406
Status Public on Apr 29, 2014
Title ACC38
Sample type genomic
 
Source name ACC38
Organism Homo sapiens
Characteristics cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Jul 26, 2013
Last update date Apr 29, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL13135
Series (2)
GSE49276 SNP data from 45 adrenocortical carcinomas
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.2208 0.411 14297 7697 1.554 0.946 2.5 0.348
rs1000002 -0.3421 0.1125 6653 1232 0.751 0.144 0.895 0.12
rs10000023 -0.1018 0.0133 16415 944 1.798 0.094 1.891 0.033
rs1000003 -0.2442 0.0043 9154 655 1.037 0.064 1.101 0.039
rs10000030 0.1668 0.9497 343 3241 0.029 0.443 0.473 0.958
rs10000037 0.1038 0.1347 7572 1590 0.923 0.202 1.125 0.137
rs10000041 -0.4628 0.0104 9733 567 1.191 0.056 1.247 0.03
rs10000042 -0.1124 0.9926 499 5984 0.046 0.754 0.8 0.961
rs10000049 0.1328 0 12744 483 1.259 0.033 1.292 0.017
rs1000007 0.0957 0.8842 1947 7928 0.22 1.088 1.308 0.873
rs10000073 -0.239 0.0024 9294 391 0.917 0.028 0.945 0.019
rs10000081 0.0337 0.13 7563 1793 0.827 0.215 1.042 0.162
rs10000092 -0.3374 0.1423 4569 1093 0.501 0.132 0.632 0.164
rs10000105 0.0331 1 542 9445 0.037 1.093 1.13 0.978
rs10000119 0.152 0.9959 569 10606 0.046 1.335 1.381 0.978
rs10000124 -0.1062 0.9945 530 9989 0.043 1.257 1.3 0.978
rs10000154 -0.043 0.1217 5856 1336 0.641 0.16 0.801 0.156
rs1000016 0.0697 0 6005 316 0.732 0.028 0.76 0.025
rs10000160 -0.0145 0.9628 718 5725 0.071 0.721 0.792 0.938
rs10000169 0.0174 0.9202 1426 8451 0.144 1.062 1.206 0.914

Total number of rows: 730525

Table truncated, full table size 40147 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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