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Sample GSM1196417 Query DataSets for GSM1196417
Status Public on Apr 29, 2014
Title ACC24
Sample type genomic
 
Source name ACC24
Organism Homo sapiens
Characteristics cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Jul 26, 2013
Last update date Apr 29, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL13135
Series (2)
GSE49276 SNP data from 45 adrenocortical carcinomas
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.0483 0.9987 575 16796 0.026 1.545 1.572 0.989
rs1000002 -0.4883 0.9986 578 7928 0.025 0.696 0.722 0.977
rs10000023 -0.0647 0 24099 787 1.878 0.052 1.93 0.018
rs1000003 -0.3167 0.0034 11561 666 0.987 0.06 1.047 0.038
rs10000030 0.7743 0.9729 509 6703 0.034 0.69 0.725 0.968
rs10000037 0.2239 1 619 11071 0.037 1.019 1.055 0.977
rs10000041 -0.4469 0 15386 642 1.227 0.036 1.263 0.019
rs10000042 0.1557 0.6606 4695 7862 0.355 0.71 1.066 0.705
rs10000049 0.2052 0.0109 15610 864 1.297 0.068 1.366 0.033
rs1000007 -0.1083 0 13536 254 1.156 0.016 1.172 0.009
rs10000073 -0.0791 0.0066 11928 461 1.019 0.038 1.057 0.024
rs10000081 -0.1065 0.3336 7757 4261 0.598 0.381 0.979 0.361
rs10000092 0.0059 0.0012 8815 396 0.753 0.034 0.787 0.029
rs10000105 0.0983 1 788 12975 0.036 1.146 1.182 0.98
rs10000119 0.1125 0.9997 691 14163 0.039 1.303 1.342 0.981
rs10000124 0.1349 0.996 869 16393 0.047 1.488 1.535 0.98
rs10000154 0.264 0 12195 276 0.95 0.015 0.965 0.01
rs1000016 1.047 0 17184 414 1.467 0.029 1.496 0.013
rs10000160 0.6014 0.9997 901 12439 0.059 1.144 1.203 0.967
rs10000169 -0.0849 0.3957 8901 6137 0.686 0.55 1.236 0.431

Total number of rows: 719665

Table truncated, full table size 39388 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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