|
| Status |
Public on Aug 06, 2014 |
| Title |
BT20-2 |
| Sample type |
RNA |
| |
|
| Source name |
BT20
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: BT20
acetylation level: Hypo
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction of total RNA was performed according to the manufacturer's instructions
|
| Label |
biotin
|
| Label protocol |
GeneChip WT Sense Target Labeling and Control Reagents, P/N 900652
|
| |
|
| Hybridization protocol |
GeneChip Hybridization, Wash, and Stain Kit, P/N 900720
|
| Scan protocol |
gene chip scanner 3000 7G
|
| Data processing |
apt-probeset-summarize -a rma -c HuGene-1_0-st-v1.r4.clf -p HuGene-1_0-st-v1.r4.pgf -m HuGene-1_0-st-v1.r4.mps --annotation-file HuGene-1_0-st-v1.na31.hg19.transcript.csv
|
| |
|
| Submission date |
Aug 08, 2013 |
| Last update date |
Dec 17, 2018 |
| Contact name |
Gabriele Bucci |
| E-mail(s) |
bucci.gabriele@hsr.it
|
| Organization name |
Università vita e Salute Ospedale San Raffaele
|
| Department |
Center of Translational Genomics and Bioinformatics
|
| Lab |
GFU
|
| Street address |
Via Olgettina 60
|
| City |
Milan |
| ZIP/Postal code |
20132 |
| Country |
Italy |
| |
|
| Platform ID |
GPL6244 |
| Series (1) |
| GSE49640 |
Expression Profiling on Human Cell Lines with Different Acetylation Levels |
|
| Relations |
| Reanalyzed by |
GSE123917 |
