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| Status |
Public on Dec 09, 2007 |
| Title |
ACET_160C_555_swap |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Silicibacter pomeroyi DSS-3, ACET treatment, 160 min.
|
| Organism |
Ruegeria pomeroyi |
| Characteristics |
DSS3
|
| Extracted molecule |
total RNA |
| Label |
AlexaFluor 555
|
| |
|
| Channel 2 |
| Source name |
Silicibacter pomeroyi DSS-3, control, 0 min.
|
| Organism |
Ruegeria pomeroyi |
| Characteristics |
DSS3
|
| Extracted molecule |
total RNA |
| Label |
AlexaFluor 647
|
| |
|
| |
| Description |
Dye in each single use vial was dissolved in 11 ul DMSO, and added to the aa-aRNA, mixed, and incubated for 1 hour in the dark at room temperature
|
| Data processing |
Lowess M Log ratio
|
| |
|
| Submission date |
Aug 08, 2006 |
| Last update date |
May 30, 2007 |
| Contact name |
Shulei Sun |
| E-mail(s) |
shulei@uga.edu
|
| Phone |
(706)542-0341
|
| Organization name |
UGA
|
| Department |
Marine Science
|
| Street address |
Department of Marine Science
|
| City |
Athens |
| State/province |
GA |
| ZIP/Postal code |
30605 |
| Country |
USA |
| |
|
| Platform ID |
GPL4067 |
| Series (1) |
| GSE5480 |
Global response of Silicibacter pomeroyi strain DSS3 to dimethyl sulfoniopropionate (DMSP) |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
log2(control/treatment) based on swaped color channel |
| B532 Median |
channel 1 (treatment) background |
| B635 Median |
channel 2 (control) background |
| F532 Median |
channel 1 signal |
| F635 Median |
channel 2 signal |
| Data table |
| ID_REF |
VALUE |
B532 Median |
B635 Median |
F532 Median |
F635 Median |
| 1 |
-0.638475 |
278 |
972 |
126 |
165 |
| 2 |
-0.211146 |
269 |
1051 |
129 |
175 |
| 3 |
-0.055028 |
250 |
935 |
120 |
172 |
| 4 |
-0.581599 |
266 |
1019 |
128 |
170 |
| 5 |
0.353476 |
277 |
920 |
182 |
255 |
| 6 |
0.212912 |
252 |
994 |
188 |
249 |
| 7 |
0.183157 |
217 |
820 |
131 |
193 |
| 8 |
-0.241254 |
267 |
1002 |
145 |
194 |
| 9 |
-0.479664 |
274 |
994 |
151 |
192 |
| 10 |
0.0763667 |
220 |
856 |
149 |
205 |
| 11 |
-0.10757 |
217 |
796 |
205 |
238 |
| 12 |
-0.156475 |
281 |
964 |
222 |
254 |
| 13 |
-0.357276 |
271 |
951 |
119 |
163 |
| 14 |
0.205096 |
214 |
856 |
117 |
178 |
| 15 |
-0.472846 |
227 |
864 |
130 |
167 |
| 16 |
-0.565819 |
270 |
956 |
130 |
170 |
| 17 |
-0.271668 |
269 |
966 |
143 |
189 |
| 18 |
0.0712506 |
215 |
843 |
132 |
189 |
| 19 |
-0.293537 |
271 |
1143 |
124 |
168 |
| 20 |
-0.358243 |
246 |
1295 |
120 |
152 |
Total number of rows: 12395
Table truncated, full table size 387 Kbytes.
| Supplementary data files not provided |
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