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Sample GSM1262434 Query DataSets for GSM1262434
Status Public on Apr 07, 2014
Title ACC79
Sample type genomic
 
Source name ACC79
Organism Homo sapiens
Characteristics Sex: F
age: 68
cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Nov 12, 2013
Last update date Apr 07, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL17913
Series (2)
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE52296 SNP data from 76 adrenocortical carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
1KG_1_100177980 -0.6676 0 10655 520 0.798 0.034 0.833 0.027
1KG_1_108681808 -0.3285 0 15901 553 1.198 0.032 1.231 0.017
1KG_1_109440678 -0.3225 1 499 9703 0.009 1.049 1.057 0.995
1KG_1_109479801 -0.1845 0.0261 18017 1605 1.358 0.145 1.503 0.068
1KG_1_110655430 -0.5778 0.9878 498 5243 0.016 0.561 0.577 0.982
1KG_1_11193226 -0.3137 0.0091 14957 1370 1.125 0.123 1.248 0.069
1KG_1_113933669 -0.5323 0.992 468 5107 0.014 0.547 0.56 0.984
1KG_1_115258741 -0.3597 0.0354 16497 2036 1.241 0.194 1.435 0.099
1KG_1_115527488 -0.6814 0.0635 1480 285 0.099 0.019 0.118 0.119
1KG_1_1158675 -0.0779 0.9966 1098 12772 0.05 1.383 1.433 0.977
1KG_1_117644041 -0.6577 0.0087 9481 413 0.709 0.024 0.733 0.022
1KG_1_118486040 -0.4406 3e-04 17834 1167 1.345 0.097 1.442 0.046
1KG_1_11893660 -0.1479 0 18083 757 1.364 0.052 1.417 0.024
1KG_1_12066749 -0.5545 0.0063 9314 751 0.696 0.061 0.757 0.056
1KG_1_12343587 -0.2879 1 777 9361 0.031 1.011 1.041 0.981
1KG_1_12632789 -0.2329 1 2825 9032 0.187 0.973 1.16 0.879
1KG_1_12711251 -0.2017 1 605 12977 0.012 1.406 1.418 0.995
1KG_1_1323216 -0.2983 0.9881 683 4731 0.031 0.505 0.536 0.961
1KG_1_14106394 -0.6707 0.0034 7216 672 0.536 0.055 0.59 0.065
1KG_1_145562155 -0.0225 0.0047 17966 705 1.355 0.047 1.402 0.022

Total number of rows: 298930

Table truncated, full table size 16443 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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