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Sample GSM1262455 Query DataSets for GSM1262455
Status Public on Apr 07, 2014
Title ACC101
Sample type genomic
 
Source name ACC101
Organism Homo sapiens
Characteristics Sex: F
age: 42
cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Nov 12, 2013
Last update date Apr 07, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL17913
Series (2)
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE52296 SNP data from 76 adrenocortical carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
1KG_1_100177980 -0.442 0.0011 15264 666 0.93 0.045 0.975 0.031
1KG_1_108681808 -0.1094 0 22837 624 1.396 0.036 1.432 0.016
1KG_1_109440678 -0.1953 1 452 12601 0.004 1.148 1.152 0.998
1KG_1_109479801 -0.013 0.0139 25285 1750 1.545 0.137 1.682 0.056
1KG_1_110655430 -0.2875 0.9927 518 7597 0.014 0.69 0.704 0.987
1KG_1_11193226 -0.1175 0.0235 20879 2027 1.274 0.166 1.439 0.082
1KG_1_113933669 -0.1658 0.9918 580 7755 0.018 0.704 0.722 0.984
1KG_1_115258741 -0.3243 0.0215 21077 2125 1.286 0.174 1.46 0.086
1KG_1_115527488 -0.3506 0.0858 2107 373 0.122 0.027 0.149 0.139
1KG_1_1158675 -0.0251 0.9957 1324 15722 0.053 1.434 1.487 0.976
1KG_1_117644041 -0.2994 0.0087 14907 511 0.909 0.031 0.939 0.022
1KG_1_118486040 -0.2725 0.0115 24494 1700 1.497 0.133 1.63 0.056
1KG_1_11893660 0.0363 7e-04 25160 1102 1.538 0.078 1.616 0.032
1KG_1_12066749 -0.103 0 15706 991 0.957 0.074 1.031 0.049
1KG_1_12343587 -0.1004 1 974 12628 0.036 1.151 1.186 0.98
1KG_1_12632789 -0.0324 0.9905 4599 12121 0.259 1.102 1.361 0.853
1KG_1_12711251 -0.1047 1 916 16403 0.027 1.497 1.524 0.988
1KG_1_1323216 -0.1335 0.9992 671 6324 0.026 0.573 0.599 0.972
1KG_1_14106394 -0.095 0.5202 7437 9730 0.437 0.881 1.318 0.707
1KG_1_145562155 -0.1759 0.0048 19953 673 1.219 0.042 1.261 0.022

Total number of rows: 298930

Table truncated, full table size 16551 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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