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Sample GSM1262464 Query DataSets for GSM1262464
Status Public on Apr 07, 2014
Title ACC113
Sample type genomic
 
Source name ACC113
Organism Homo sapiens
Characteristics Sex: F
age: 53
cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Nov 12, 2013
Last update date Apr 07, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL17913
Series (2)
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE52296 SNP data from 76 adrenocortical carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
1KG_1_100177980 -0.2675 0 21165 691 1.055 0.042 1.098 0.025
1KG_1_108681808 -0.1159 0 27790 663 1.389 0.036 1.426 0.017
1KG_1_109440678 -0.158 0.9952 859 13329 0.02 1.17 1.189 0.989
1KG_1_109479801 -0.1456 0.027 27906 1960 1.394 0.151 1.545 0.069
1KG_1_110655430 -0.3086 0.9909 682 7771 0.016 0.679 0.695 0.985
1KG_1_11193226 -0.1546 0.0213 24927 2020 1.244 0.158 1.401 0.08
1KG_1_113933669 -0.0999 0.9972 634 8483 0.013 0.742 0.755 0.989
1KG_1_115258741 -0.303 0.0041 26494 1899 1.323 0.146 1.469 0.07
1KG_1_115527488 -0.0726 0 3533 186 0.167 0.007 0.174 0.027
1KG_1_1158675 -0.0636 0.99 1775 15832 0.064 1.39 1.454 0.971
1KG_1_117644041 -0.1646 0.0047 20095 523 1.002 0.028 1.03 0.018
1KG_1_118486040 -0.2213 0.0145 30934 1908 1.547 0.144 1.691 0.059
1KG_1_11893660 -0.0739 0 28553 1034 1.428 0.068 1.496 0.031
1KG_1_12066749 -0.3462 0.0061 16179 979 0.804 0.07 0.874 0.056
1KG_1_12343587 -0.1327 0.9959 1303 12780 0.043 1.121 1.164 0.976
1KG_1_12632789 -0.1154 1 4448 12063 0.202 1.056 1.258 0.88
1KG_1_12711251 -0.0727 0.9952 1330 17348 0.04 1.524 1.564 0.983
1KG_1_1323216 -0.1726 0.9945 904 6373 0.029 0.555 0.584 0.967
1KG_1_14106394 -0.315 0.0086 13777 1038 0.683 0.077 0.759 0.071
1KG_1_145562155 -0.2899 0.0085 22486 733 1.122 0.045 1.167 0.026

Total number of rows: 298930

Table truncated, full table size 16589 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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