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Sample GSM1262473 Query DataSets for GSM1262473
Status Public on Apr 07, 2014
Title ACC125
Sample type genomic
 
Source name ACC125
Organism Homo sapiens
Characteristics Sex: M
age: 44
cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Nov 12, 2013
Last update date Apr 07, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL17913
Series (2)
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE52296 SNP data from 76 adrenocortical carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
1KG_1_100177980 -0.1764 0.0039 17864 882 1.115 0.058 1.174 0.033
1KG_1_108681808 -0.0343 0 23497 670 1.471 0.037 1.508 0.016
1KG_1_109440678 -0.0566 1 578 15153 0.01 1.261 1.271 0.995
1KG_1_109479801 -0.0325 0.0211 24226 2026 1.515 0.15 1.666 0.063
1KG_1_110655430 -0.3851 0.9974 436 7818 0.009 0.648 0.657 0.991
1KG_1_11193226 -0.1324 0.023 20201 2149 1.261 0.163 1.424 0.082
1KG_1_113933669 -0.3759 0.9987 435 7404 0.009 0.613 0.623 0.99
1KG_1_115258741 -0.2152 0.0289 22075 2629 1.379 0.202 1.581 0.093
1KG_1_115527488 -0.4353 0 2219 143 0.13 0.005 0.135 0.026
1KG_1_1158675 0.0164 0.9962 1325 17727 0.054 1.476 1.53 0.977
1KG_1_117644041 -0.1017 0.0031 16786 496 1.048 0.027 1.075 0.016
1KG_1_118486040 -0.1376 0.0134 26218 2040 1.641 0.15 1.791 0.058
1KG_1_11893660 -0.001 0 24169 875 1.513 0.054 1.567 0.023
1KG_1_12066749 -0.5382 0 11395 800 0.708 0.055 0.763 0.049
1KG_1_12343587 -0.0771 1 821 14124 0.026 1.175 1.201 0.986
1KG_1_12632789 -0.0468 1 3113 13507 0.171 1.122 1.294 0.904
1KG_1_12711251 -0.0958 1 694 18160 0.013 1.513 1.526 0.994
1KG_1_1323216 -0.3008 1 539 6224 0.017 0.515 0.532 0.979
1KG_1_14106394 -0.0797 0.9702 1776 14833 0.085 1.234 1.319 0.956
1KG_1_145562155 -0.1427 0.0067 19911 758 1.245 0.047 1.291 0.024

Total number of rows: 298930

Table truncated, full table size 16501 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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