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Sample GSM1262474 Query DataSets for GSM1262474
Status Public on Apr 07, 2014
Title ACC123
Sample type genomic
 
Source name ACC123
Organism Homo sapiens
Characteristics Sex: F
age: 79
cell type: Adrenocortical carcinoma
Extracted molecule genomic DNA
Extraction protocol Tumor samples were powdered under liquid nitrogen. DNA was extracted and purified by cesium chloride gradient ultracentrifugation or by proteinase K digestion and ethanol extraction, followed by a clean-up step on columns (QIAGEN, Courtaboeuf, France).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Adrenocortical carcinoma
Data processing standard Illumina protocol
 
Submission date Nov 12, 2013
Last update date Apr 07, 2014
Contact name Nabila Elarouci
E-mail(s) Nabila.Elarouci@ligue-cancer.net
Organization name Ligue Nationale contre le Cancer
Department Recherche
Lab Carte d'identité des tumeurs
Street address 14 rue Corvisart
City Paris
ZIP/Postal code 75 013
Country France
 
Platform ID GPL17913
Series (2)
GSE49280 Integrated genomic analyses of adrenocortical tumors (SNP array, DNA methylation, mRNA and miRNA expression).
GSE52296 SNP data from 76 adrenocortical carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
1KG_1_100177980 -0.6586 0.0071 12524 686 0.796 0.045 0.842 0.036
1KG_1_108681808 -0.2311 0 20065 613 1.281 0.035 1.317 0.018
1KG_1_109440678 -0.2819 1 422 13573 0.004 1.081 1.085 0.998
1KG_1_109479801 0.0323 0.0253 24720 2290 1.579 0.167 1.746 0.067
1KG_1_110655430 -0.3597 1 336 8336 0.004 0.663 0.667 0.996
1KG_1_11193226 -0.1993 0.0341 18726 2336 1.194 0.174 1.367 0.092
1KG_1_113933669 -0.5104 0.9881 521 6952 0.017 0.553 0.57 0.98
1KG_1_115258741 -0.1351 0.0265 22881 2806 1.46 0.209 1.669 0.09
1KG_1_115527488 -0.8754 0.0022 1569 154 0.092 0.009 0.101 0.063
1KG_1_1158675 0.0427 0.9936 1386 18827 0.06 1.5 1.561 0.974
1KG_1_117644041 -0.0696 0.0108 16674 641 1.063 0.039 1.103 0.024
1KG_1_118486040 -0.1707 0.0056 25253 1830 1.614 0.13 1.744 0.051
1KG_1_11893660 -0.0922 0.0022 21998 1115 1.405 0.074 1.48 0.034
1KG_1_12066749 -0.413 0.0043 12100 932 0.769 0.065 0.834 0.054
1KG_1_12343587 -0.0938 1 831 14556 0.029 1.16 1.189 0.984
1KG_1_12632789 -0.1058 1 3100 13484 0.176 1.073 1.249 0.896
1KG_1_12711251 -0.0718 0.9972 1000 19162 0.035 1.527 1.563 0.985
1KG_1_1323216 -0.459 0.9835 707 5665 0.031 0.45 0.48 0.957
1KG_1_14106394 -0.4229 0.0087 9998 995 0.633 0.071 0.705 0.072
1KG_1_145562155 -0.3822 0.0118 16457 739 1.049 0.047 1.097 0.029

Total number of rows: 298930

Table truncated, full table size 16590 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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