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Sample GSM1279977 Query DataSets for GSM1279977
Status Public on Jan 06, 2014
Title Primary tumour region, EV006-R2
Sample type RNA
 
Source name Primary tumour region
Organism Homo sapiens
Characteristics tissue: clear cell renal cell carcinoma
age: 65
Sex: M
patient identifier: EV006
Growth protocol Fresh frozen.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted.
Label biotin
Label protocol Affymetrix protocol.
 
Hybridization protocol Exon 1.0 ST Cocktail hybridization.
Scan protocol PICR scanner 3000.
Description EV006-R2
Gene expression from a primary tumour region.
Data processing The expression values of the samples were normalized using the oligo R package.
 
Submission date Dec 04, 2013
Last update date Jan 07, 2014
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
 
Platform ID GPL6244
Series (1)
GSE53000 Expression data from spatially separated samples of different ccRCC patients

Data table header descriptions
ID_REF
VALUE Log2 RMA signal (oligo::rma)

Data table
ID_REF VALUE
7892501 4.184389735
7892502 5.003098351
7892503 3.911238205
7892504 8.772548539
7892505 3.690488648
7892506 5.169265845
7892507 5.686342032
7892508 6.724258717
7892509 11.70055477
7892510 4.325702122
7892511 4.732545948
7892512 7.18605472
7892513 3.624874736
7892514 11.53464361
7892515 10.12061448
7892516 4.570931856
7892517 6.763245468
7892518 3.661204682
7892519 6.071246756
7892520 9.708116722

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1279977_EV006-R2.CEL.gz 4.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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