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Sample GSM1279988 Query DataSets for GSM1279988
Status Public on Jan 06, 2014
Title Primary tumour region, EV007-R4
Sample type RNA
 
Source name Primary tumour region
Organism Homo sapiens
Characteristics tissue: clear cell renal cell carcinoma
age: 59
Sex: F
patient identifier: EV007
Growth protocol Fresh frozen.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted.
Label biotin
Label protocol Affymetrix protocol.
 
Hybridization protocol Exon 1.0 ST Cocktail hybridization.
Scan protocol PICR scanner 3000.
Description EV007-R4
Gene expression from a primary tumour region.
Data processing The expression values of the samples were normalized using the oligo R package.
 
Submission date Dec 04, 2013
Last update date Jan 07, 2014
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
 
Platform ID GPL6244
Series (1)
GSE53000 Expression data from spatially separated samples of different ccRCC patients

Data table header descriptions
ID_REF
VALUE Log2 RMA signal (oligo::rma)

Data table
ID_REF VALUE
7892501 3.619780493
7892502 4.941760375
7892503 3.490981983
7892504 8.645243341
7892505 3.441469925
7892506 5.334975062
7892507 6.834978833
7892508 6.551197167
7892509 11.42079457
7892510 5.374039625
7892511 4.480739954
7892512 7.247388559
7892513 3.08451408
7892514 11.3326793
7892515 10.14069628
7892516 4.736160179
7892517 5.984361117
7892518 2.900860559
7892519 6.028115678
7892520 9.680680188

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1279988_EV007-R4.CEL.gz 4.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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