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Sample GSM1280006 Query DataSets for GSM1280006
Status Public on Jan 06, 2014
Title Primary tumour region, RMH004-R3
Sample type RNA
 
Source name Primary tumour region
Organism Homo sapiens
Characteristics tissue: clear cell renal cell carcinoma
age: 61
Sex: M
patient identifier: RMH004
Growth protocol Fresh frozen.
Extracted molecule total RNA
Extraction protocol Total RNA was extracted.
Label biotin
Label protocol Affymetrix protocol.
 
Hybridization protocol Exon 1.0 ST Cocktail hybridization.
Scan protocol PICR scanner 3000.
Description RMH004-R3
Gene expression from a primary tumour region.
Data processing The expression values of the samples were normalized using the oligo R package.
 
Submission date Dec 04, 2013
Last update date Jan 07, 2014
Contact name Pierre Martinez
Organization name Cancer Research Centre of Lyon
Street address 28 rue Laennec
City Lyon cedex 08
ZIP/Postal code 69373
Country France
 
Platform ID GPL6244
Series (1)
GSE53000 Expression data from spatially separated samples of different ccRCC patients

Data table header descriptions
ID_REF
VALUE Log2 RMA signal (oligo::rma)

Data table
ID_REF VALUE
7892501 3.313111289
7892502 5.093837758
7892503 4.029390639
7892504 9.180392226
7892505 4.638751322
7892506 4.694258724
7892507 5.447711744
7892508 6.81757211
7892509 11.28487156
7892510 4.81099174
7892511 5.190168831
7892512 7.001022158
7892513 2.847406656
7892514 11.26413661
7892515 10.01798534
7892516 4.950569724
7892517 6.406652067
7892518 4.70184962
7892519 6.094072981
7892520 9.526313251

Total number of rows: 33297

Table truncated, full table size 646 Kbytes.




Supplementary file Size Download File type/resource
GSM1280006_RMH004-R3.CEL.gz 4.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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