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Status
Public on Mar 16, 2004
Title
germ cells on STO day 20 GPL342
Sample type
RNA
Source name
germ cells from 22 day old rat testis, cultured for 20 days
Organism
Rattus norvegicus Extracted molecule
total RNA
Description
50 ng total RNA were amplified using two rounds of amplification. Detection calls were calculated using a Tau value of 0.015. Signal intensities were scaled to an average of 250 (scale factor 1.441).
Submission date
Nov 10, 2003
Last update date
May 28, 2005
Contact name
Nikolaus Schultz
E-mail(s)
schultz@cbio.mskcc.org Phone
646-888-2604
Organization name
Memorial Sloan-Kettering Cancer Center
Department
Computational Biology Center
Street address
1275 York Ave, Box 460
City
New York
State/province
NY
ZIP/Postal code
10065
Country
USA
Platform ID
GPL342 Series (1)
Data table header descriptions ID_REF Affymetrix probe id
VALUE signal intensity
ABS_CALL present (P), absent (A), marginal (M) call
DETECTION P-VALUE p-value that indicates the significance level of the detection call
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
468.1
P
0.002023
AFFX-BioB-M_at
743.8
P
0.000044
AFFX-BioB-3_at
325.1
P
0.000052
AFFX-BioC-5_at
1149.9
P
0.00007
AFFX-BioC-3_at
688.4
P
0.000044
AFFX-BioDn-5_at
920.5
P
0.000081
AFFX-BioDn-3_at
3105.3
P
0.000147
AFFX-CreX-5_at
10254.4
P
0.000044
AFFX-CreX-3_at
9816.4
P
0.000044
AFFX-DapX-5_at
29.7
M
0.062929
AFFX-DapX-M_at
40.2
A
0.123572
AFFX-DapX-3_at
3.1
A
0.99238
AFFX-LysX-5_at
9.7
A
0.617401
AFFX-LysX-M_at
4.2
A
0.897835
AFFX-LysX-3_at
10.3
A
0.712257
AFFX-PheX-5_at
4.6
A
0.978098
AFFX-PheX-M_at
4.5
A
0.814869
AFFX-PheX-3_at
62.5
A
0.382599
AFFX-ThrX-5_at
4.5
A
0.834139
AFFX-ThrX-M_at
35
A
0.205732
15333 406 Kbytes .Supplementary file Size Download File type/resource GSM12802.CEL.gz
2.5 Mb
(ftp) (http) CEL
