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Sample GSM128489 Query DataSets for GSM128489
Status Public on Mar 23, 2015
Title 1351_p_2
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 16101.0391 277.5310 G 155.1056 16184.0391 9067.0000 16864.0684 131 12.9148902893066 104.342063911258 84.8626 83.0000 14.2280 188
1002 1 672.0345 11.5838 G 8.1270 750.0345 771.0000 419.4345 87 10.5248203277588 92.2896107731976 78.3702 78.0000 9.5264 187
1003 1 0.7333 0.0126 L 0.8533 80.7333 80.0000 10.9907 30 6.18038702011108 94.6099170361419 79.8297 80.0000 9.7399 188
1004 1 14.5854 0.2514 L 0.9944 91.5854 91.0000 16.8131 41 7.22515201568604 92.098253244093 77.7802 77.0000 10.0655 188
1005 1 15.7561 0.2716 G 1.0062 91.7561 94.0000 12.3284 41 7.22515201568604 91.1890645047786 76.8462 76.0000 10.1260 188
1006 1 21.8000 0.3758 G 1.0720 98.8000 98.0000 11.2143 50 7.97884559631348 92.163544227786 76.8187 77.0000 10.1090 188
1007 1 31.5172 0.5433 G 1.1888 108.5172 107.0000 14.2299 58 8.59348011016846 91.2852545473726 77.1978 77.0000 9.5235 188
1008 1 13686.9297 235.9194 G 138.2146 13768.9297 3333.0000 16528.9414 172 14.7985544204712 99.619903875399 82.2750 82.0000 11.7466 124
1009 1 518.2529 8.9330 G 6.3697 595.2529 673.0000 259.3678 87 10.5248203277588 93.4505101152808 78.2486 77.0000 10.9670 187
1010 1 411.6049 7.0948 G 5.3416 488.6049 605.0000 229.3321 81 10.1554126739502 91.4716317378032 77.7714 77.0000 9.6478 181
1011 1 128.1519 2.2089 G 2.2919 203.1519 218.0000 53.6373 79 10.0292530059814 88.6391449505759 75.5165 75.0000 9.0928 188
1012 1 74.7313 1.2881 G 1.6270 152.7313 158.0000 32.5166 67 9.23618125915527 93.8727545368661 78.1916 78.0000 10.5818 173
1013 1 47.8358 0.8245 G 1.3543 123.8358 125.0000 16.2697 67 9.23618125915527 91.4411126059687 75.4936 76.0000 10.2941 162
1014 1 113.9747 1.9646 G 2.0850 189.9747 207.0000 53.6722 79 10.0292530059814 91.114736691044 76.6149 76.0000 10.0765 180
1015 1 13187.2002 227.3057 G 135.5169 13266.2002 4660.0000 15850.2490 147 13.6808700561523 97.8933441006058 81.2083 79.0000 12.5956 124
1016 1 57.9836 0.9995 G 1.4881 136.9836 141.0000 27.6201 61 8.81292343139648 92.050108631933 78.2692 79.0000 8.7001 188
1017 1 29.1458 0.5024 G 1.1582 106.1458 106.0000 14.1392 48 7.81764030456543 91.6487966008205 76.4011 77.0000 9.7659 188
1018 1 12.2941 0.2119 L 0.9737 90.2941 88.0000 12.7222 34 6.57952451705933 92.7349924312656 76.9121 78.0000 9.8233 188
1019 1 13.1765 0.2271 L 0.9675 91.1765 90.0000 11.7660 34 6.57952451705933 94.2437225624623 77.5385 78.0000 10.8292 188
1020 1 8.3833 0.1445 L 0.9348 88.3833 88.0000 15.3178 60 8.74038791656494 94.543688765746 79.0085 80.0000 9.6958 122

Total number of rows: 54359

Table truncated, full table size 6545 Kbytes.




Supplementary file Size Download File type/resource
GSM128489.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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