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Sample GSM128521 Query DataSets for GSM128521
Status Public on Mar 23, 2015
Title 1986_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 17903.2070 196.6750 G 143.6340 18009.2070 5997.0000 20223.0098 166 14.5381488800049 125.382616194836 105.8583 106.0000 12.9217 124
1002 1 1220.3434 13.4060 G 10.5219 1327.3434 1583.0000 617.5171 99 11.2272310256958 126.150779602739 106.0989 107.0000 12.7672 188
1003 1 15.2000 0.1670 L 0.9709 120.2000 119.0000 14.4811 35 6.67558097839355 123.802327478804 105.7667 105.0000 12.5349 186
1004 1 30.6964 0.3372 G 1.1026 133.6964 131.0000 15.9552 56 8.444016456604 121.257858947896 104.3315 103.0000 12.1719 187
1005 1 13.5091 0.1484 L 0.9508 119.5091 118.0000 16.5693 55 8.36828422546387 125.69111927433 105.0667 106.0000 13.1274 124
1006 1 24.3333 0.2673 G 1.0466 130.3333 134.0000 16.8218 48 7.81764030456543 124.532207695375 107.0385 106.0000 12.3548 188
1007 1 29.9787 0.3293 G 1.0718 136.9787 140.0000 16.1318 47 7.73577785491943 127.805779318138 107.0659 107.0000 13.8705 188
1008 1 16097.4219 176.8376 G 128.9343 16204.4219 3685.0000 19121.2617 156 14.093451499939 125.679716387395 107.4500 107.0000 12.4531 124
1009 1 516.6667 5.6758 G 5.0053 621.6667 698.0000 244.6866 84 10.3417663574219 124.20103173023 104.3702 105.0000 12.8007 187
1010 1 1101.8766 12.1046 G 9.8106 1206.8766 1512.0000 642.4303 81 10.1554126739502 123.017094539692 103.8901 105.0000 12.0114 188
1011 1 111.4384 1.2242 G 1.7719 216.4384 219.0000 43.7026 73 9.64087581634521 122.1507179216 105.4615 105.0000 11.4338 188
1012 1 292.2667 3.2107 G 3.2268 396.2667 441.0000 148.4227 75 9.77204990386963 122.805178576878 105.3889 104.0000 12.5368 186
1013 1 73.0606 0.8026 G 1.4400 178.0606 178.0000 29.1729 66 9.16699600219727 123.655068338172 104.2747 105.0000 12.4367 188
1014 1 67.5606 0.7422 G 1.4014 173.5606 175.0000 29.3888 66 9.16699600219727 123.847279974719 105.3132 106.0000 11.8982 188
1015 1 15965.4736 175.3881 G 129.7967 16070.4736 6529.0000 18884.6152 156 14.093451499939 123.812688726568 104.6417 105.0000 12.5418 124
1016 1 34.7895 0.3822 G 1.1210 140.7895 137.0000 15.7187 57 8.51907634735107 125.592318396812 106.7569 106.0000 13.0615 187
1017 1 22.2444 0.2444 G 1.0404 129.2444 129.0000 17.0322 45 7.56939744949341 124.229893728985 106.4780 107.0000 11.4866 188
1018 1 18.3243 0.2013 G 1.0028 126.3243 127.0000 15.0657 37 6.86366271972656 125.969869518267 106.6319 108.0000 11.9799 188
1019 1 19.7568 0.2170 G 1.0068 125.7568 128.0000 14.3704 37 6.86366271972656 124.908905851935 106.5580 106.0000 12.6059 187
1020 1 25.8537 0.2840 G 1.0557 131.8537 133.0000 18.5282 41 7.22515201568604 124.902529898524 105.8736 106.0000 12.6017 188

Total number of rows: 54359

Table truncated, full table size 6760 Kbytes.




Supplementary file Size Download File type/resource
GSM128521.TXT.gz 2.6 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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