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GEO accession:
Sample GSM128521
Query DataSets for GSM128521
Status
Public on Mar 23, 2015
Title
1986_p_1
Sample type
RNA
Source name
biopsy, prior to treatment, chemoradiotherapy
Organism
Homo sapiens
Characteristics
female, cervical cancer
Extracted molecule
total RNA
Extraction protocol
ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label
Cy5
Label protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
Hybridization protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol
http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description
prior to treatment, chemoradiotherapy
Data processing
global median normalization
Submission date
Aug 15, 2006
Last update date
Mar 23, 2015
Contact name
Shuhei Noda
E-mail(s)
s_noda@nirs.go.jp
Organization name
National institute of radiological sciences
Department
Frontier research center
Street address
Anagawa 4-9-1
City
Chiba
State/province
Chiba
ZIP/Postal code
2658333
Country
Japan
Platform ID
GPL2895
Series (1)
GSE6213
Cervical cancer samples in NIRS
Data table header descriptions
ID_REF
Array
Logical array
Raw_intensity
Raw signal intensity value
VALUE
Median normalized signal intensity value
Quality_flag
CodeLink quality flag
Signal_strength
Signal strength
Spot_mean
Spot median
Spot_median
Spot median
Spot_stdev
Spot standard deviation
Spot_area
Spot area
Spot_diameter
Spot diameter
Spot_noise_level
Spot noise level
Bkgd_mean
Background mean
Bkgd_median
Background median
Bkgd_stdev
Background standard deviation
Bkgd_area
Background area
Data table
ID_REF
Array
Raw_intensity
VALUE
Quality_flag
Signal_strength
Spot_mean
Spot_median
Spot_stdev
Spot_area
Spot_diameter
Spot_noise_level
Bkgd_mean
Bkgd_median
Bkgd_stdev
Bkgd_area
1001
1
17903.2070
196.6750
G
143.6340
18009.2070
5997.0000
20223.0098
166
14.5381488800049
125.382616194836
105.8583
106.0000
12.9217
124
1002
1
1220.3434
13.4060
G
10.5219
1327.3434
1583.0000
617.5171
99
11.2272310256958
126.150779602739
106.0989
107.0000
12.7672
188
1003
1
15.2000
0.1670
L
0.9709
120.2000
119.0000
14.4811
35
6.67558097839355
123.802327478804
105.7667
105.0000
12.5349
186
1004
1
30.6964
0.3372
G
1.1026
133.6964
131.0000
15.9552
56
8.444016456604
121.257858947896
104.3315
103.0000
12.1719
187
1005
1
13.5091
0.1484
L
0.9508
119.5091
118.0000
16.5693
55
8.36828422546387
125.69111927433
105.0667
106.0000
13.1274
124
1006
1
24.3333
0.2673
G
1.0466
130.3333
134.0000
16.8218
48
7.81764030456543
124.532207695375
107.0385
106.0000
12.3548
188
1007
1
29.9787
0.3293
G
1.0718
136.9787
140.0000
16.1318
47
7.73577785491943
127.805779318138
107.0659
107.0000
13.8705
188
1008
1
16097.4219
176.8376
G
128.9343
16204.4219
3685.0000
19121.2617
156
14.093451499939
125.679716387395
107.4500
107.0000
12.4531
124
1009
1
516.6667
5.6758
G
5.0053
621.6667
698.0000
244.6866
84
10.3417663574219
124.20103173023
104.3702
105.0000
12.8007
187
1010
1
1101.8766
12.1046
G
9.8106
1206.8766
1512.0000
642.4303
81
10.1554126739502
123.017094539692
103.8901
105.0000
12.0114
188
1011
1
111.4384
1.2242
G
1.7719
216.4384
219.0000
43.7026
73
9.64087581634521
122.1507179216
105.4615
105.0000
11.4338
188
1012
1
292.2667
3.2107
G
3.2268
396.2667
441.0000
148.4227
75
9.77204990386963
122.805178576878
105.3889
104.0000
12.5368
186
1013
1
73.0606
0.8026
G
1.4400
178.0606
178.0000
29.1729
66
9.16699600219727
123.655068338172
104.2747
105.0000
12.4367
188
1014
1
67.5606
0.7422
G
1.4014
173.5606
175.0000
29.3888
66
9.16699600219727
123.847279974719
105.3132
106.0000
11.8982
188
1015
1
15965.4736
175.3881
G
129.7967
16070.4736
6529.0000
18884.6152
156
14.093451499939
123.812688726568
104.6417
105.0000
12.5418
124
1016
1
34.7895
0.3822
G
1.1210
140.7895
137.0000
15.7187
57
8.51907634735107
125.592318396812
106.7569
106.0000
13.0615
187
1017
1
22.2444
0.2444
G
1.0404
129.2444
129.0000
17.0322
45
7.56939744949341
124.229893728985
106.4780
107.0000
11.4866
188
1018
1
18.3243
0.2013
G
1.0028
126.3243
127.0000
15.0657
37
6.86366271972656
125.969869518267
106.6319
108.0000
11.9799
188
1019
1
19.7568
0.2170
G
1.0068
125.7568
128.0000
14.3704
37
6.86366271972656
124.908905851935
106.5580
106.0000
12.6059
187
1020
1
25.8537
0.2840
G
1.0557
131.8537
133.0000
18.5282
41
7.22515201568604
124.902529898524
105.8736
106.0000
12.6017
188
Total number of rows:
54359
Table truncated, full table size
6760 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM128521.TXT.gz
2.6 Mb
(ftp)
(http)
TXT
Processed data included within Sample table
Processed data provided as supplementary file
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