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Sample GSM128549 Query DataSets for GSM128549
Status Public on Mar 23, 2015
Title 2776_p_1
Sample type RNA
 
Source name biopsy, prior to treatment, chemoradiotherapy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Mar 23, 2015
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE6213 Cervical cancer samples in NIRS

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE Median normalized signal intensity value
Quality_flag CodeLink quality flag
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area
1001 1 11494.4863 253.5549 C 35.0383 11609.4863 14288.0000 6584.9253 115 12.1005182266235 331.337324737356 166.6667 115.0000 144.2249 124
1002 1 229.7286 5.0675 C 1.4623 330.7286 336.0000 57.6945 70 9.44069766998291 226.175593503047 137.8077 101.0000 83.4504 188
1003 1 301.6207 6.6534 I 2.4156 397.6207 130.0000 735.6625 29 6.07650756835938 164.608210857432 113.7176 96.0000 45.7388 176
1004 1 76.4609 1.6866 G 1.1261 175.4609 143.0000 80.6856 117 12.2052869796753 155.810670673775 111.6839 99.0000 37.8738 180
1005 1 112.0625 2.4720 G 1.2206 216.0625 195.0000 94.0220 48 7.81764030456543 177.017432831401 118.4127 104.0000 48.6783 130
1006 1 17.1379 0.3780 CL 0.5862 111.1379 110.0000 12.8163 29 6.07650756835938 189.58713253727 113.8462 94.0000 63.7248 188
1007 1 29.0909 0.6417 G 1.1139 120.0909 118.0000 15.8418 66 9.16699600219727 107.815212007546 91.9171 91.0000 11.2101 187
1008 1 7679.0903 169.3917 G 43.5170 7771.0903 8100.0000 5552.0718 124 12.5650987625122 178.57603607944 103.0833 92.0000 57.7174 124
1009 1 141.7949 3.1278 G 2.1255 232.7949 232.0000 53.5909 78 9.96557521820068 109.526198681844 91.8820 91.0000 12.3508 184
1010 1 146.7714 3.2376 G 2.0935 236.7714 234.0000 50.8750 70 9.44069766998291 113.095895702603 92.3571 90.0000 15.3973 188
1011 1 37.4559 0.8262 G 1.1902 128.4559 127.0000 18.8207 68 9.30485343933105 107.930819135166 91.1813 91.0000 11.2872 188
1012 1 37.9245 0.8366 G 1.0893 126.9245 124.0000 16.4154 53 8.21472454071045 116.51715479395 92.9505 89.0000 18.3448 188
1013 1 25.0444 0.5525 G 1.0537 116.0444 116.0000 11.7850 45 7.56939744949341 110.135075006472 91.7088 91.0000 12.7567 188
1014 1 22.0526 0.4865 G 1.0546 112.0526 115.0000 13.3119 57 8.51907634735107 106.249571962471 89.8846 90.0000 10.8330 188
1015 1 6044.4038 133.3325 G 60.2112 6131.4038 3351.0000 5883.7856 163 14.4061803817749 101.831550464188 88.5083 87.0000 9.8877 124
1016 1 29.8333 0.6581 G 1.1687 113.8333 114.0000 12.8582 72 9.57461452484131 97.4032549448382 85.5165 84.0000 8.9355 188
1017 1 25.2069 0.5560 G 1.1117 110.2069 110.0000 10.7331 58 8.59348011016846 99.1326486527408 86.1264 85.0000 9.4218 188
1018 1 22.9231 0.5057 G 1.0852 108.9231 106.0000 13.0397 52 8.1368579864502 100.369013055036 85.8516 86.0000 9.5793 188
1019 1 21.8615 0.4822 G 1.0689 107.8615 106.0000 16.4690 65 9.09728336334229 100.909301003095 86.5714 86.0000 9.9395 188
1020 1 24.4000 0.5382 G 1.1032 109.4000 110.0000 14.0715 60 8.74038791656494 99.1680177391068 85.1648 85.0000 9.4453 188

Total number of rows: 54359

Table truncated, full table size 6554 Kbytes.




Supplementary file Size Download File type/resource
GSM128549.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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