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Sample GSM128559 Query DataSets for GSM128559
Status Public on Apr 30, 2007
Title 2791_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 5885.7808 108.4022 G 52.7032 5984.7808 4650.0000 5384.9248 157 14.1385507583618 113.55631248133 99.0583 99.0000 9.7042 124 108.4022
1002 1 204.1829 3.7606 G 2.4941 303.1829 321.0000 66.4826 82 10.2179079055786 121.560708451435 101.7127 99.0000 15.0405 187 3.7606
1003 1 28.6094 0.5269 G 1.0982 125.6094 122.0000 12.4218 64 9.02703380584717 114.37865014263 97.6758 97.0000 11.5858 188 0.5269
1004 1 32.9143 0.6062 G 1.1486 128.9143 127.0000 13.1635 70 9.44069766998291 112.239480436557 95.3626 96.0000 10.8263 188 0.6062
1005 1 22.2241 0.4093 G 1.0731 119.2241 121.0000 14.9321 58 8.59348011016846 111.104975127805 97.2582 97.0000 9.4033 188 0.4093
1006 1 29.2000 0.5378 G 1.1305 124.2000 123.0000 13.1549 65 9.09728336334229 109.862140800765 95.8187 95.0000 9.9081 188 0.5378
1007 1 45.0845 0.8304 G 1.2689 141.0845 140.0000 18.7630 71 9.50789165496826 111.188340234636 96.4066 96.0000 10.1256 188 0.8304
1008 1 5899.3765 108.6526 G 53.1010 5996.3765 4366.0000 5698.9805 164 14.4503040313721 112.924036907201 98.0000 97.0000 10.6160 124 108.6526
1009 1 379.4556 6.9887 G 4.1908 476.4556 513.0000 162.6444 90 10.7047443389893 113.689785643725 97.6044 97.0000 11.1265 188 6.9887
1010 1 159.2785 2.9335 G 2.2796 257.2785 274.0000 67.7693 79 10.0292530059814 112.86305823517 96.8343 98.0000 9.9087 187 2.9335
1011 1 43.0933 0.7937 G 1.2323 139.0933 134.0000 32.4671 75 9.77204990386963 112.871418812156 96.9494 96.0000 11.2476 184 0.7937
1012 1 41.7656 0.7692 G 1.2406 137.7656 136.0000 20.6388 64 9.02703380584717 111.049392715507 96.3626 96.0000 10.0329 188 0.7692
1013 1 29.0794 0.5356 G 1.1218 126.0794 123.0000 19.2810 63 8.95623207092285 112.386612435876 97.7253 97.0000 10.2577 188 0.5356
1014 1 18.7241 0.3449 L 0.8211 115.7241 118.0000 12.1935 29 6.07650756835938 140.932091484656 101.9780 97.0000 29.2881 188 0.3449
1015 1 6897.8164 127.0415 G 61.0998 6996.8164 5325.0000 6511.6792 171 14.7554721832275 114.514590520125 98.0667 99.0000 10.3431 124 127.0415
1016 1 46.1200 0.8494 G 1.2779 141.1200 140.0000 17.0341 75 9.77204990386963 110.430411695061 95.4835 95.0000 10.2869 188 0.8494
1017 1 25.5147 0.4699 G 1.0755 122.5147 124.0000 11.1415 68 9.30485343933105 113.914010278474 96.8516 97.0000 11.2760 188 0.4699
1018 1 26.2982 0.4844 G 1.1024 121.2982 120.0000 13.6343 57 8.51907634735107 110.031417543978 95.7692 95.0000 10.0209 188 0.4844
1019 1 22.0167 0.4055 G 1.0497 119.0167 117.0000 15.6455 60 8.74038791656494 113.382825387116 97.9396 97.0000 10.9219 188 0.4055
1020 1 27.9649 0.5150 G 1.0878 127.9649 126.0000 13.6818 57 8.51907634735107 117.632022021879 99.9066 100.0000 11.7547 188 0.5150

Total number of rows: 54359

Table truncated, full table size 6954 Kbytes.




Supplementary file Size Download File type/resource
GSM128559.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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