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Sample GSM128560 Query DataSets for GSM128560
Status Public on Apr 30, 2007
Title 2791_d_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, chemoradiotherapy
Data processing global median normalization
 
Submission date Aug 15, 2006
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 6261.0708 125.8849 G 58.8538 6356.0708 3360.0000 6349.0146 172 14.7985544204712 107.99757586411 95.1833 95.0000 8.6650 124 125.8849
1002 1 188.6667 3.7933 G 2.6147 280.6667 301.0000 69.7565 87 10.5248203277588 107.343823204952 92.0220 92.0000 10.2292 188 3.7933
1003 1 26.5357 0.5335 G 1.1031 119.5357 117.0000 13.7334 56 8.444016456604 108.362382321017 93.0000 93.0000 10.2416 188 0.5335
1004 1 32.4638 0.6527 G 1.1410 123.4638 123.0000 13.5396 69 9.37302112579346 108.208008960139 91.8011 91.0000 11.4720 187 0.6527
1005 1 24.6613 0.4958 G 1.0724 113.6613 113.0000 12.3705 62 8.88486671447754 105.991833562167 90.4231 89.0000 11.3279 188 0.4958
1006 1 27.8594 0.5601 G 1.1051 118.8594 119.0000 12.1371 64 9.02703380584717 107.555470696165 92.2308 91.0000 11.0370 188 0.5601
1007 1 39.9870 0.8040 G 1.2290 130.9870 130.0000 15.1764 77 9.90148735046387 106.578620544362 92.3462 91.0000 10.3857 188 0.8040
1008 1 6479.9375 130.2854 G 60.7322 6568.9375 4564.0000 6125.0156 162 14.3619222640991 108.162396898353 90.9667 89.0000 12.7749 124 130.2854
1009 1 387.7684 7.7965 G 4.5777 478.7684 510.0000 169.2970 95 10.9980792999268 104.586479164842 90.4056 91.0000 9.0577 186 7.7965
1010 1 144.3462 2.9022 G 2.2445 233.3462 251.0000 58.4627 78 9.96557521820068 103.965661924365 89.5138 89.0000 9.9771 187 2.9022
1011 1 39.5467 0.7951 G 1.2411 127.5467 126.0000 15.0681 75 9.77204990386963 102.768679584434 89.9945 88.0000 9.8458 188 0.7951
1012 1 33.3125 0.6698 G 1.1711 122.3125 121.0000 13.2746 64 9.02703380584717 104.443370228734 90.2692 89.0000 10.2956 188 0.6698
1013 1 32.0933 0.6453 G 1.1658 123.0933 119.0000 21.6741 75 9.77204990386963 105.590267934686 91.3812 91.0000 9.7268 187 0.6453
1014 1 28.4225 0.5715 G 1.1343 115.4225 112.0000 12.9001 71 9.50789165496826 101.754507326863 88.2857 87.0000 9.8363 188 0.5715
1015 1 7009.8423 140.9397 G 63.6989 7103.8423 3983.0000 6891.2710 173 14.8415107727051 111.522202458384 95.6000 94.0000 11.6815 124 140.9397
1016 1 33.4861 0.6733 G 1.1747 125.4861 125.0000 12.6117 72 9.57461452484131 106.828160882737 92.8453 92.0000 9.8854 187 0.6733
1017 1 27.4571 0.5521 G 1.1128 118.4571 114.0000 14.0017 70 9.44069766998291 106.452603876639 91.3407 91.0000 10.3017 188 0.5521
1018 1 23.4915 0.4723 G 1.0895 115.4915 116.0000 13.0830 59 8.66724491119385 106.007625048842 92.5000 92.0000 9.3384 188 0.4723
1019 1 20.0233 0.4026 G 1.0090 113.0233 115.0000 18.5917 43 7.3992772102356 112.017546475499 93.2582 93.0000 12.6784 188 0.4026
1020 1 21.8214 0.4387 G 1.0508 114.8214 117.0000 9.6937 56 8.444016456604 109.27363802464 92.9006 93.0000 10.8491 187 0.4387

Total number of rows: 54359

Table truncated, full table size 6941 Kbytes.




Supplementary file Size Download File type/resource
GSM128560.TXT.gz 2.5 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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